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. 2021 Jun 3;4:668. doi: 10.1038/s42003-021-02173-3

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — a The overall numbers of pseudogenes detected in each group are shown in different colours reference to left y-axis, and the numbers of shared pseudogenes in each group are shown in black. The pseudogenes in each group are divided into three types, namely, frame-shift mutation, premature-stop codon, and both, and the ratios of types are displayed by lines reference to right y-axis. b The functional classification of the pseudogenes in each group. c KEGG enrichment analysis of the PSGs. d PSGs generated by the orthologous genes annotated in at least two species in each dietary group. The number in parentheses represents the number of PSGs in the group. The dot plot shows the numbers of positively selected sites across four different dietary groups. The x-axis indicates the number of loci detected as being under selection pressure, and the y-axis indicates the number of positively selected loci with a BEB posterior probability greater than 95% in PAML. PSG positively selected gene, KEGG Kyoto Encyclopedia of Genes and Genomes, BEB Bayesian empirical Bayes.