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. 2021 May 21;8:654125. doi: 10.3389/fvets.2021.654125

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Copyright © 2021 Massé, Lardé, Fairbrother, Roy, Francoz, Dufour and Archambault.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Antimicrobial resistance gene profiles of randomly selected ESBL (n = 4) or AmpC (n = 4) producing Escherichia coli isolated from calf or cow feces or manure pit of 101 dairy farms in Québec, Canada. Isolates were recovered using a selective protocol. Whole genome sequencing of selected isolates was processed on Resfinder and PointFinder in the Center for Genomic Epidemiology (CGE) to determine the presence of antimicrobial resistance genes. Black blocks indicate the presence of the corresponding gene. Antimicrobial classes associated with resistance genes are listed in the column to the right of the gene names. *Promoter mutation in ampC-42 C -> T.