Table 1.
Summary of scRNA-seq datasets obtained for plants.
| Publication date | References | Drop-Seq platform | Illumina platform | Organism | Plant organ | Average reads per cell | Total genes detected | Expressed genes per cell |
|---|---|---|---|---|---|---|---|---|
| March 2019 | Denyer et al., 2019 | NanoDrop | NextSeq | A. thaliana | Root | 87.000 | 17.000 | 4.276 |
| April 2019 | Ryu et al., 2019 | 10X Genomics | HiSeq 4000 | A. thaliana | Root | 75.000 | 22.000 | 5.000 |
| May 2019 | Zhang et al., 2019 | 10X Genomics | NovaSeq | A. thaliana | Root | 40.000 | 23.161 | 1.875 |
| May 2019 | Shulse et al., 2019 | Drop-seq v. 3.1 | HiSeq 2500, HiSeq 4000, NextSeq | A. thaliana | Root | >1,000 UMI | 20.464 | 1.549 |
| May 2019 | Jean-Baptiste et al., 2019 | 10X Genomics | NextSeq 500 | A. thaliana | Root | 19.000 | 22.000 | 2.445 |
| July 2019 | Turco et al., 2019 | Drop-seq v. 3.1 | NextSeq | A. thaliana | Root | NA | 21.603 | NA |
| April 2021 | Lopez-Anido et al., 2021 | 10X Genomics | NextSeq500, HiSeq4000 | A. thaliana | Leaf | 70.000 | NA | 1.870 |
| December 2020 | Satterlee et al., 2020 | Droplet microfluidics | NextSeq 500 | Zea mays | Shoot | NA | NA | 2000 |
| January 2021 | Kim et al., 2021 | 10X Genomics | HiSeq 2500 | A. thaliana | Leaf | 96.000 | 27.000 | 3.300 |
| January 2021 | Farmer et al., 2021 | 10X Genomics | HiSeq | A. thaliana | Root | NA | 25.000 | 4.700 |
| January 2021 | Bezrutczyk et al., 2021 | 10X Genomics | HiSeq | Zea mays | Phloem | 5,000 | NA | NA |
| February 2021 | Xu et al., 2021 | 10x Genomics | NextSeq 500 | Zea mays | Ears | 32.000 | 28.900 | 1800 |
| March 2021 | Liu et al., 2021 | 10x Genomics | HiSeq 2000 | Oryza sativa | Roots | NA | NA | 2600 |