Table 2.
Gene sets enriched in high CDK5 expression phenotype
| MSigDB collection | Gene set name | NES | NOM p-val | FDR q-val |
|---|---|---|---|---|
| Kegg.v6.2.symbols.gmt | KEGG_AMINO_SUGAR_AND_NUCLEOTIDE_SUGAR_METABOLISM | 1.81 | 0.00204 | 0.0364 |
| KEGG_GALACTOSE_METABOLISM | 1.89 | 0.00390 | 0.0204 | |
| KEGG_GLUTATHIONE_METABOLISM | 1.95 | 0 | 0.0154 | |
| KEGG_GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM | 1.76 | 0.00202 | 0.0450 | |
| KEGG_OXIDATIVE_PHOSPHORYLATION | 2.08 | 0 | 0.00674 | |
| KEGG_PENTOSE_PHOSPHATE_PATHWAY | 1.76 | 0 | 0.0480 | |
| KEGG_PROTEASOME | 1.91 | 0 | 0.0193 |
NES: normalized enrichment score; NOM: nominal; FDR: false discovery rate. Gene sets with NOM P-value <0.05 and FDR q-value <0.05 were considered as significantly enriched.