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. 2021 Jun 4;22(Suppl 3):405. doi: 10.1186/s12864-021-07717-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — The clusters of TEs with different expression patterns during the reprogramming of fibroblast cells in Macaca mulatta. (A) The clusters of TEs and their expression patterns at different stages of reprogramming. (B) The categories of TEs in different clusters. Blue lines indicate the average expression levels of genes in the cluster in different cell lines. Red lines indicate average expressions plus/minus standard deviations. (C) - (D) Several TEs that belong to the Cluster T0 of Part (A). (E) - (F) Several TEs that belong to the Cluster T1 in Part (A). (G) - (I) Several MacERV3 integrase elements that belong to the Cluster T3 in Part (A). In Part (C) to (I), one of the two replicated RNA-Seq profiles for each lines were shown