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. 2021 Jun 4;22(Suppl 3):405. doi: 10.1186/s12864-021-07717-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — The clusters of LTRs with different expression patterns during the reprogramming of fibroblast cells in Macaca mulatta. In Part (B) to (D), the numbers in the trees are bootstrap values greater than 500 (50%). (A) The clusters of LTRs and their expression patterns at different stages of reprogramming. Blue lines indicate the average expression levels of genes in the cluster in different cell lines. Red lines indicate average expressions plus/minus standard deviations. (B) The phylogenetic tree of LTRs in the Clusters L0 and L3 of Part (A). (C) The phylogenetic tree of LTRs in the Cluster L1 in Part (A). (D) The phylogenetic tree of LTRs in the Cluster L4 in Part (A). (E) The expression levels of LTRs in the Clusters L0 and L3 of Part (A). (F) - (G) The expressions of two solo LTRs in the 7 cell lines. One of the two replicated RNA-Seq profiles for each lines were shown