Extended Data Table 1.
Cryo-EM data collection, refinement and validation statistics
| NTS-NTSR1-Gi-cND canonical state, AHD and nanodisc mask out (EMD-23099, PDB 7L0P) | NTS-NTSR1-Gi-cND canonical state, overall (EMD-23100, PDB 7L0Q) | NTS-NTSR1-Gi-cND noncanonical state, AHD and nanodisc mask out (EMD-23101, PDB 7L0R) | NTS-NTSR1-Gi-cND noncanonical state, overall (EMD-23102, PDB 7L0S) | |
|---|---|---|---|---|
| Data collection and processing | ||||
| Magnification | 105,000 | 105,000 | 105,000 | 105,000 |
| Voltage (kV) | 300 | 300 | 300 | 300 |
| Electron exposure (e-/Å2) | 57 | 57 | 57 | 57 |
| Defocus range (μm) | −1.2 to −2.5 | −1.2 to −2.5 | −1.2 to −2.5 | −1.2 to −2.5 |
| Pixel size (Å) | 0.825 | 0.825 | 0.825 | 0.825 |
| Symmetry imposed | C1 | C1 | C1 | C1 |
| Initial particle images (no.) | 4,367,542 | 4,367,542 | 4,367,542 | 4,367,542 |
| Final particle images (no.) | 575,791 | 575,791 | 324,002 | 324,002 |
| Map resolution (Å) | 4.1 | 4.3 | 4.2 | 4.5 |
| FSC threshold | 0.143 | 0.143 | 0.143 | 0.143 |
| Refinement | ||||
| Initial model used (PDB code) | 4BUO, 1GP2, 6OY9 | |||
| Map sharpening B factor (Å2) | −245 | −222 | −204 | −228 |
| Model composition | ||||
| Non-hydrogen atoms | 6954 | 7892 | 6968 | 7906 |
| Protein residues | 882 (6896 atoms) | 996 (7834 atoms) | 881 (6910 atoms) | 995 (7848 atoms) |
| Ligands | 1 (6 residues, 58 atoms) | 1 (6 residues, 58 atoms) | 1 (6 residues, 58 atoms) | 1 (6 residues, 58 atoms) |
| B factors (Å2) | ||||
| Protein | 73.6 | 69.75 | 73.63 | 69.79 |
| Ligand | 66.76 | 66.76 | 66.76 | 66.76 |
| R.m.s. deviations | ||||
| Bond lengths (Å) | 0.006 | 0.007 | 0.007 | 0.008 |
| Bond angles (°) | 1.051 | 1.286 | 1.368 | 1.508 |
| Validation | ||||
| MolProbity score | 1.9 | 1.84 | 1.96 | 2 |
| Clashscore | 8.36 | 7.82 | 9.79 | 9.27 |
| Poor rotamers (%) | 0.53 | 0.7 | 1.05 | 1.39 |
| Ramachandran plot | ||||
| Favored (%) | 93.1 | 93.69 | 93.44 | 93.99 |
| Allowed (%) | 6.9 | 6.31 | 6.56 | 6.01 |
| Disallowed (%) | 0 | 0 | 0 | 0 |