TABLE 1.
Comparative transcriptomic analysis of photosynthesis for the heterotrophically grown S. acuminatus cells subjected to the high light and N-limited conditions.
| Category | Gene_ID | KO_ID | Enzyme | Gene_name | 6 h |
12 h |
24 h |
|||
| Log2FC | FDR | Log2FC | FDR | Log2FC | FDR | |||||
| PSI | c11348_c0_g1 | K02689 | Photosystem I P700 chlorophyll a apoprotein A1 | PsaA | –1.763 | 3.78E-16 | –1.107 | 2.32E-04 | –0.373 | 2.71E-01 |
| c2811_c0_g1 | K02692 | Photosystem I subunit II | PsaD | 0.138 | 2.43E-03 | –0.513 | 1.58E-14 | –2.950 | 7.93E-272 | |
| c16988_c0_g1 | K08905 | Photosystem I subunit V | PsaG | 0.208 | 4.28E-04 | 0.094 | 2.74E-01 | –2.539 | 4.22E-139 | |
| c13333_c0_g1 | K02696 | Photosystem I subunit VIII | PsaI | 0.217 | 1.94E-07 | –0.442 | 2.46E-09 | –3.678 | 4.01E-209 | |
| c7310_c0_g1 | K02699 | Photosystem I subunit XI | PsaL | 0.194 | 3.85E-06 | –0.177 | 3.48E-02 | –3.780 | 1.22E-272 | |
| c6347_c0_g1 | K02701 | Photosystem I subunit PsaN | PsaN | 0.947 | 2.67E-80 | 0.513 | 5.83E-12 | –4.628 | 7.28E-306 | |
| c15041_c0_g1 | K02639 | Ferredoxin | PetF | –0.622 | 7.13E-18 | –1.825 | 6.23E-73 | –2.927 | 3.64E-88 | |
| c19224_c0_g3 | K02638 | Plastocyanin | PetE | –0.536 | 8.02E-51 | –0.508 | 2.51E-11 | –2.378 | 2.66E-131 | |
| c16349_c0_g1 | K02641 | Ferredoxin-NADP + reductase | PetH | 0.296 | 8.13E-13 | 0.027 | 7.58E-01 | –1.821 | 9.11E-131 | |
| PSII | c11222_c0_g1 | K02703 | Photosystem II P680 reaction center D1 protein | PsbA | –1.383 | 2.23E-47 | 0.948 | 6.97E-07 | 0.375 | 2.69E-02 |
| c14164_c0_g1 | K02704 | Photosystem II CP47 chlorophyll apoprotein | PsbB | –2.446 | 1.49E-20 | –2.224 | 4.76E-09 | NA | NA | |
| c15153_c0_g1 | K02705 | Photosystem II CP43 chlorophyll apoprotein | PsbC | –1.006 | 1.30E-09 | 0.659 | 2.53E-03 | –0.742 | 3.99E-04 | |
| c2432_c0_g1 | K02706 | Photosystem II P680 reaction center D2 protein | PsbD | –2.088 | 5.01E-18 | NA | NA | NA | NA | |
| c17184_c0_g1 | K02716 | Photosystem II oxygen-evolving enhancer protein 1 | PsbO | 0.471 | 2.62E-37 | –0.236 | 5.32E-04 | –3.520 | 0.00E + 00 | |
| c17823_c0_g1 | K02717 | Photosystem II oxygen-evolving enhancer protein 2 | PsbP | 0.196 | 2.66E-07 | –0.052 | 4.41E-01 | –3.598 | 3.68E-291 | |
| c16649_c0_g1 | K08901 | Photosystem II oxygen-evolving enhancer protein 3 | PsbQ | 0.587 | 6.94E-43 | 0.028 | 7.71E-01 | –3.889 | 7.78E-247 | |
| c18753_c1_g2 | K03541 | Photosystem II 10 kDa protein | PsbR | 0.028 | 5.36E-01 | –0.467 | 2.38E-09 | –2.686 | 1.44E-233 | |
| c19487_c0_g1 | K03542 | Photosystem II 22 kDa protein | PsbS | –0.310 | 9.70E-02 | –1.194 | 6.65E-14 | 0.626 | 4.83E-03 | |
| c18171_c0_g1 | K02723 | Photosystem II PsbY protein | PsbY | 1.049 | 8.29E-108 | –0.358 | 3.63E-06 | –3.184 | 6.70E-154 | |
| c15459_c0_g1 | K08902 | Photosystem II Psb27 protein | Psb27 | 0.436 | 2.85E-11 | –0.365 | 6.61E-06 | –2.292 | 9.67E-76 | |
| c19359_c6_g1 | K08903 | Photosystem II 13 kDa protein | Psb28 | –0.959 | 2.20E-05 | –1.892 | 1.42E-20 | –5.144 | 7.84E-56 | |
| LHC | c19400_c0_g1 | K08907 | Light-harvesting complex I chlorophyll a/b binding protein 1 | LHCA1 | –2.329 | 0.00E + 00 | –1.931 | 1.70E-184 | –2.795 | 0.00E + 00 |
| c13244_c1_g1 | K08908 | Light-harvesting complex I chlorophyll a/b binding protein 2 | LHCA2 | –0.024 | 5.98E-01 | 0.287 | 1.86E-04 | –3.787 | 0.00E + 00 | |
| c14924_c0_g1 | K08909 | Light-harvesting complex I chlorophyll a/b binding protein 3 | LHCA3 | –0.046 | 2.99E-01 | 0.156 | 2.54E-02 | –4.177 | 0.00E + 00 | |
| c12657_c0_g1 | K08910 | Light-harvesting complex I chlorophyll a/b binding protein 4 | LHCA4 | 0.177 | 6.58E-06 | –0.044 | 5.73E-01 | –4.682 | 0.00E + 00 | |
| c13616_c0_g1 | K08911 | Light-harvesting complex I chlorophyll a/b binding protein 5 | LHCA5 | 0.211 | 3.72E-09 | 0.064 | 4.39E-01 | –3.896 | 0.00E + 00 | |
| c19523_c4_g1 | K08912 | Light-harvesting complex II chlorophyll a/b binding protein 1 | LHCB1 | 0.368 | 9.03E-20 | 0.330 | 1.94E-06 | –3.863 | 0.00E + 00 | |
| c19022_c2_g6 | K08915 | Light-harvesting complex II chlorophyll a/b binding protein 4 | LHCB4 | 0.354 | 1.75E-19 | –0.194 | 1.25E-02 | –3.417 | 3.08E-209 | |
| c12740_c0_g1 | K08916 | Light-harvesting complex II chlorophyll a/b binding protein 5 | LHCB5 | –0.285 | 1.08E-10 | –0.009 | 9.30E-01 | –4.435 | 0.00E + 00 | |
| ATPase | c12514_c0_g1 | K02109 | F-type H + -transporting ATPase subunit b | ATPF0B | –0.216 | 1.69E-07 | –0.523 | 9.20E-16 | –3.084 | 0.00E + 00 |
| c19297_c1_g1 | K02113 | F-type H + -transporting ATPase subunit delta | ATPF1D | –0.295 | 1.91E-12 | –0.329 | 4.95E-07 | –3.131 | 0.00E + 00 | |
| c19650_c0_g1 | K02115 | F-type H + -transporting ATPase subunit gamma | ATPF1G | 0.111 | 1.51E-02 | –0.493 | 2.05E-12 | –2.715 | 4.64E-186 | |
| b6f | c19562_c6_g4 | K08906 | Cytochrome c6 | PetJ | –0.689 | 1.45E-07 | –1.521 | 2.04E-27 | –3.483 | 8.69E-31 |
| c16278_c0_g2 | K02636 | Cytochrome b6-f complex iron-sulfur subunit | PetC | 0.452 | 8.79E-27 | –0.220 | 2.59E-03 | –2.793 | 2.66E-231 | |