Antibodies |
Anti-PACRG mouse monoclonal antibody (C-8) |
Santa Cruz Biotechnology |
Cat: sc-373851; RRID: AB_10988029 |
Anti-His-tag rabbit polyclonal antibody |
Cell Signaling Technology |
Cat: 2366; RRID: AB_2115719 |
Anti-TAMRA mouse monoclonal antibody (11H10) |
ThermoFisher Scientific |
Cat: MA1-042; RRID: AB_2536729 |
Bacterial and Virus Strains |
E. coli BL21(DE3) – Novagen |
Sigma-Aldrich/ Merck |
Cat: 69450-3 |
E. coli DH5α |
New England Biolabs |
Cat: C2987I |
Chemicals, Peptides, and Recombinant Proteins |
Restriction endonucleases: BamHI, NcoI, SalI, XhoI |
New England Biolabs |
Cat: BamHI R0136S, NcoI, R0193S, SalI R0138S, XhoI R0146S |
T4 DNA ligase |
New England Biolabs |
Cat: M0202T |
QuickChange II Site Directed Mutagenesis kit |
Agilent |
Cat: 200524 |
p-iodo-L-phenylalanine |
Sigma-Aldrich |
Cat: I8757 |
Ampicillin sodium salt |
Fisher Scientific |
Cat: BP176025
|
Anhydrotetracycline |
Sigma-Aldrich |
Cat: 37919 |
Chloramphenicol |
Biobasic |
Cat: CB0118 |
IPTG |
Biobasic |
Cat: IB0168 |
Ni-NTA agarose |
Qiagen |
Cat: 1000632 |
Glutathione-sepharose 4B |
Cytiva |
Cat: 17-0756-01 |
Iodoacetamide |
Sigma-Aldrich |
Cat: I6125 |
Subtilisin |
Sigma-Aldrich |
Cat: P5380 |
Trypsin |
Sigma-Aldrich |
Cat: T6567 |
GST-3C protease |
Homemade |
N/A |
His6-TEV protease |
Homemade |
N/A |
JCSG plus screen |
Molecular Dimensions |
Cat: MD-137 |
50% w/v PEG 8000 |
Molecular Dimensions |
Cat: MD2-100-13 |
100% glycerol |
Molecular Dimensions |
Cat: MD2-100-65 |
1 M potassium phosphate monobasic |
Molecular Dimensions |
Cat: MD2-100-164 |
Fractogel EMD SO3- (M) resin |
Millipore-Sigma |
Cat: 1168820010 |
HiLyte Fluor 488 acid NHS ester |
Anaspec |
Cat: AS-81161 |
Tetramethylrhodamine (TAMRA) |
ThermoFisher Scientific |
Cat:C1171 |
Guanosine-5’-[(α,β)-methyleno]triphosphate (GMPCPP) |
Jena Bioscience |
Cat: NU-405S |
Tubulin |
Cytoskeleton |
Cat: T240-A |
PIPES |
Sigma-Aldrich |
Cat: 80635 |
Paclitaxel from Taxus brevifolia, PTX; Taxol |
Gold Bio |
Cat: P-925-100 |
Guanosine triphosphate (GTP) |
Sigma-Aldrich |
Cat: G5884 |
1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) |
ThermoFisher Scientific |
Cat: PG82079 |
N-hydroxysuccimide (NHS) |
ThermoFisher Scientific |
Cat: PI24500 |
Disuccinimidyl suberate (DSS) |
ThermoFisher Scientific |
Cat: 21655 |
Critical Commercial Assays |
4-20% stain-free TGX gradient gels |
BioRad |
Cat: 4568096 |
Pepclean C18 spin columns |
ThermoFisher Scientific |
Cat: PI89873 |
Deposited Data |
Native MEIG1:PACRGΔ1–69
|
This work |
PDB: 6NDU |
iodo-Y189Φ MEIG1:PACRGΔ1–69
|
This work |
PDB: 6NEP |
Proteolysed MEIG1:PACRGFL
|
This work |
PDB: 6UCC |
Porcine tubulin dimer |
(Nogales et al., 1998) |
PDB: 1TUB |
Chlamydomonas reinhardtii axonemal doublet microtubule |
(Khalifa et al., 2020) |
PDB: 6VE7 EMD: 20858 |
Recombinant DNA |
Human His6-MEIG1, cloned in pRSET-A |
This work/Thermofisher |
N/A |
Human PACRG1–257 (FL), cloned in pGEX-6P-1 |
This work/DNA Express |
N/A |
Human PACRGΔ1–69 WT, cloned in pGEX-6P-1 |
This work |
N/A |
Human PACRGΔ1–69 F75X, cloned in pGEX-6P-1 |
This work |
N/A |
Human PACRGΔ1–69 Y76X, cloned in pGEX-6P-1 |
This work |
N/A |
Human PACRGΔ1–69 Y108X, cloned in pGEX-6P-1 |
This work |
N/A |
Human PACRGΔ1–69 F121X, cloned in pGEX-6P-1 |
This work |
N/A |
Human PACRGΔ1–69 Y189X, cloned in pGEX-6P-1 |
This work |
N/A |
Human PACRG-WT His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG Δ1–35 His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG Δ36–69 His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-Y76F His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E77K His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E86A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E86K His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-H87A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-D88A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-K93I His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-A95T His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E99A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-I100E His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E101A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-H106A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-H132A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E136A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E136Q His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-H137A His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-R160Q His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-P195R His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-E252K His6MEIG1, cloned in pRSF-DUET |
This work |
N/A |
Human PACRG-Y76F-E77K-E86KH87A His6MEIG1, cloned in pRSF-DUET (Group 1) |
This work |
N/A |
Human PACRG-K154E-R160Q-R191E His6MEIG1, cloned in pRSF-DUET (Group 2) |
This work |
N/A |
Human PACRG-WT His6MEIG1-H13AK78A-H81A-K82A-Y86A, cloned in pRSF-DUET (Group 3) |
This work |
N/A |
Human PACRGL1–248 (FL), cloned in pET-151D-TOPO |
This work/Thermofisher |
N/A |
pDB070.iodo.5 |
(Bryson et al., 2017) / Addgene |
Cat: 99397 |
Software and Algorithms |
XDS |
(Kabsch, 2010) |
xds.mpimf-heidelberg.mpg.de |
Aimless (CCP4 package) |
(Winn et al., 2011) |
www.ccp4.ac.uk/html/aimless.html |
PHENIX 1.12 including Autosol, PHASER-MR, Refine |
(Liebschner et al., 2019) |
www.phenix-online.org/documentation/index.html |
ARP/wARP 8.0 |
(Langer et al., 2008) |
www.embl-hamburg.de/ARP |
Coot 0.8.9.1 |
(Emsley et al., 2010) |
www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot |
Fiji |
(Schindelin et al., 2012) |
imagej.net/Fiji |
DataAnalysis and Biotools |
Bruker |
www.bruker.com |
PyMOL 2.4.0 |
Schrödinger LLC |
pymol.org |
Prism 9 |
GraphPad |
www.graphpad.com/scientificsoftware/prism |
Excel 16.40 |
Microsoft |
www.microsoft.com/fr-ca/microsoft365/excel |
GnomAD server |
(Lek et al., 2016) |
gnomad.broadinstitute.org |
I-TASSER server |
(Yang et al., 2015) |
zhanglab.ccmb.med.umich.edu/ITASSER |
Protein Atlas server |
(Uhlen et al., 2015) |
www.proteinatlas.org |
Other |
GSTrap 4B |
Cytiva |
Cat: 45001429 |
HiLoad 16/600 Superdex 75 pg |
Cytiva |
Cat: 28989333 |
Superdex 75 Increase 10/300 GL |
Cytiva |
Cat: 29148721 |