TABLE 3.
MSigDB collection | Gene set | NES |
NOM p‐value |
FDR q‐value |
---|---|---|---|---|
H. all v7.1 symbols gmt [Hallmarks] |
HALLMARK OXIDATIVE PHOSPHORYLATION | 2.13 | 0.004* | 0.004 |
HALLMARK DNA REPAIR | 1.94 | 0.002* | 0.054 | |
HALLMARK FATTY ACID METABOLISM | 1.83 | 0.008* | 0.098 | |
HALLMARK MTORC1 SIGNALING | 1.79 | 0.019* | 0.106 | |
HALLMARK PEROXISOME | 1.76 | 0.006* | 0.109 | |
HALLMARK UV RESPONSE UP | 1.69 | 0.010* | 0.151 | |
HALLMARK ADIPOGENESIS | 1.68 | 0.051 | 0.132 | |
HALLMARK E2F TARGETS | 1.66 | 0.047* | 0.130 | |
HALLMARK MYC TARGETS V2 | 1.62 | 0.024* | 0.151 | |
HALLMARK MYC TARGETS V1 | 1.61 | 0.036* | 0.146 |
Abbreviations: FDR, false discovery rate; NES, normalized enrichment score; nominal p‐value, nominal p‐value.
NOM p‐value <0.05.