Table 1.

Results of functional investigations’ summarised for each of the three selected Mlincs

Mlinc	Predicted RNA-Protein interactions (lncADeep)	Subcompartment enrichment	FANTOM6 expr. changes	Diff. genes in positive cells	K-mers investigations
Mlinc.28428	Apoptosis, mRNA decay, PPARA activity, intracellular transport, response to hypoxia and cell cycle	Chromatin, cytoplasm	BOLA3-AS1, JPX, SERTAD4-AS1, PTCHD3P1, ERVK3.1, SNRPD3, MEG3	H19, PI16	Stress, senescence
Mlinc.128022	THY1, NRF1	Chromatin, cytoplasm	FOXN3-AS1, A1BG-AS1, CD27-AS1, FLVCR1-AS1	FTH1, TPM2, FTL, CD24, HMGN2, HMGB1, ODC1, PTTG1, BIRC5, EIF5A, MKI67, UBE2S, FGF5, HAS2-AS1	Osteodiff., Stress
Mlinc.89912	MGMT-mediated DNA damage reversal, Nonsense Mediated Decay, Tubulin metabolism	nucleus (free), cytoplasm	NEAT1_1, PCAT6, MFI2-AS1, MKLN1-AS2, CDKN2B-AS1	FGF5 and HIST1H4C	Proliferation