Steady-state photophysical data for ABN in DNA oligonucleotides.
Oligoa | λ abs, max/nm | λ em, max/nm | Φ em | T m/°C | ΔTmb/°C |
---|---|---|---|---|---|
ODN1 | 450 | 530 | 0.55 | 63.6 ± 0.6 | +3.1 |
ODN1:ODN2 | 440 | 530 | 0.53 | 61.8 ± 0.4 | −4.7 |
ODN1:ODN3 | 468 | 523 | 0.40 | 61.3 ± 0.6 | +1.6c |
ODN4 | 452 | 540 | 0.49 | — | — |
ODN4:ODN5 | 440 | 525 | 0.51 | 39.9 ± 0.3 | −0.5 |
ODN4:ODN6 | 470 | 523 | 0.29 | 41.3 ± 0.3 | −7.3c |
ODN7 | d | 532 | 0.62 | — | — |
ODN7:ODN8 | d | 532 | 0.50 | 34.3 ± 0.3 | −14.1 |
ODN7:ODN9 | d | 532 | 0.55 | 37.9 ± 0.3 | −11.8c |
Oligonucleotide sequences are given in Fig. 3.
ΔTm = Tm for ABN-containing duplex listed in the table row − Tm for the corresponding duplex with canonical thymidine in place of ABN.
Comparison with Tm for the corresponding natural duplex with a C:G base pair.
λ ex,max is concentration-dependent; see Fig. S18.