Variation of the ASO or SNA based on their base modification, target, spacer region and conjugation. FANA = 2′-fluoroarabino nucleic acid with phosphothioate (PS) linkages. ASO = antisense oligonucleotide with PS linkages against firefly luciferase. SNA = strand with 12 units of dodecanediol that assembles into spherical nucleic acid. PO-dN4/8 = 4 or 8 nucleotide spacer with phosphate linkages (PO). PS-dN4/8 = 4 or 8 nucleotide spacer with PS linkages. Survivin = FANA antisense oligonucleotide with PS linkages against survivin. NegativeASO = non-targeting sequence with PS linkages. mmASO = antisense oligonucleotide against firefly luciferase with 3 mismatches and PS linkages. APOB = FANA antisense oligonucleotide against APOB with PS linkages.
Strand name | Base modification | Target | Spacer | Conjugate | Symbol |
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FANA-ASO | FANA | Luciferase | — | — |
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FANA-SNA | FANA | Luciferase | — | (Dodecanediol) × 12 |
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FANA-(PO-dN4)-ASO | FANA | Luciferase | (PO-dN4) | — |
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FANA-(PO-dN4)-SNA | FANA | Luciferase | (PO-dN4) | (Dodecanediol) × 12 |
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FANA-(PS-dN4)-ASO | FANA | Luciferase | (PS-dN4) | — |
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FANA-(PS-dN4)-SNA | FANA | Luciferase | (PS-dN4) | (Dodecanediol) × 12 |
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FANA-(PO-dN8)-ASO | FANA | Luciferase | (PO-dN8) | — |
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FANA-(PO-dN8)-SNA | FANA | Luciferase | (PO-dN8) | (Dodecanediol) × 12 |
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FANA-(PS-dN8)-ASO | FANA | Luciferase | (PS-dN8) | — |
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FANA-(PS-dN8)-SNA | FANA | Luciferase | (PS-dN8) | (Dodecanediol) × 12 |
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FANA-survivin-(PO-dN4)-ASO | FANA | Survivin | (PO-dN4) | — |
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FANA-survivin-(PO-dN4)-SNA | FANA | Survivin | (PO-dN4) | (Dodecanediol) × 12 |
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PS-DNA-ASO | — | Luciferase | — | — | |
PS-survivin-ASO | — | Survivin | — | — | |
PO-DNA-negativeASO(18) | — | — | — | — | |
PS-DNA-mmASO | — | Mismatch to luciferase | — | — | |
FANA-(PO-dN4)-mmASO | FANA | Mismatch to luciferase | (PO-dN4) | — | |
FANA-(PO-dN4)-mmSNA | FANA | Mismatch to luciferase | (PO-dN4) | (Dodecanediol) × 12 | |
FANA-DNA-NegativeASO | FANA | — | — | — | |
FANA-DNA-NegativeSNA | FANA | — | — | (Dodecanediol) × 12 | |
PS-(PO-dN4)-DNA-SNA | — | Luciferase | — | (Dodecanediol) × 12 | |
FANA-APOB-(PO-dN4)-ASO | FANA | APOB | (PO-dN4) | — | |
FANA-APOB-(PO-dN4)-SNA | FANA | APOB | (PO-dN4) | (Dodecanediol) × 12 | |
Control | — | — | — | — | No strand was used |