Table 4. List of MRM acquisition mode parameters for biomarker discovery.

No.	Uniprot accession no.	Protein name	Peptide sequence	Target ion	Q1 (m/z)	Q3 (m/z)	RT (min)	DP (V)	CE (V)
1	P02763	α-1-acid glycoprotein 1	SDVVYTDWK	2b3	556.767	302.135	4.41	71.7	28.9
				2y5	556.767	712.330	4.41	71.7	28.9
				2y6	556.767	811.398	4.41	71.7	28.9
2	P01031	Complement C5	ATLLDIYK	2y2	468.774	310.176	7.25	65.3	25.7
				2y4	468.774	538.287	7.25	65.3	25.7
				2y6	468.774	764.455	7.25	65.3	25.7
3	P02750	Leucine-rich α-2-glycoprotein	DLLLPQPDLR	2b2	590.340	229.118	8.99	74.2	30.1
				2b3	590.340	342.202	9.00	74.2	30.1
				2y6	590.340	725.394	9.00	74.2	30.1
4	P04004	Vitronectin	FEDGVLDPDYPR	2b2	711.830	277.118	5.90	83.0	34.5
				2y5	711.830	647.315	5.90	83.0	34.5
				2y7	711.830	875.426	5.90	83.0	34.5
5	O14791	Apolipoprotein L1	VTEPISAESGEQVER	2y6	815.900	717.353	3.07	90.6	38.2
				2y8	815.900	933.427	3.08	90.6	38.2
				2y10	815.900	1091.496	3.08	90.6	38.2
6	P06396	Gelsolin	AGALNSNDAFVLK	2b3	660.351	200.103	6.13	79.3	32.6
				2y2	660.351	260.197	6.12	79.3	32.6
				2y9	660.351	1007.516	6.13	79.3	32.6
7	P05452	Tetranectin	LDTLAQEVALLK	2b3	657.387	330.166	10.10	79.0	32.5
				2y7	657.387	800.488	10.10	79.0	32.5
				2y8	657.387	871.525	10.10	79.0	32.5

The bold-faced target ion was used in final quantification. Abbreviations: CE, collision energy; DP, declustering potential; RT, retention time.