Table I.
Establishing an equivalence between the Global Initiative on Sharing All Influenza Data (GISAID), Nextstrain and Phylogenetic Assignment of Named Global Outbreak LINeages (Pangolin) nomenclature systems with respect to the genome sequence data from India (n=3014)
| GISAID clades | Nextstrain | Dominant Pangolin lineages | Major marker mutations |
|---|---|---|---|
| G | 20A | B.1, B.1.80 | S: D614G |
| GR | 20B | B.1.1.32, B.1.1, B.1.1.8 | S: D614G + N: G204R |
| GH | 20C | B.1.113, B.1.36 | S: D614G + nsp3:Q57H |
| V | 19A | B.2.1 | nsp6:L37F + nsp3:G251V |
| L (Ref. seq. WIV04) | 19A | B | - |
| S | 19B | A | ORF8:L84S |
| O | 19A | B.6, B.4 | ORF1a: L3606F |