Supplementary Table II.
Distribution of the Indian sequences (n=3014) in the Global Initiative on Sharing All Influenza Data, Nextstrain and Phylogenetic Assignment of Named Global Outbreak LINeages clades
| GISAID clade | Count of sequences | Nextstrain new clades# | Pangolin |
|---|---|---|---|
| O | 649 | 19A=514 | B.6=501 |
| 19B=6 | B.1=52 | ||
| 20A=53 | B.1.1=24 | ||
| 20B=11 (65) | B.4=22 | ||
| B=18 | |||
| B.1.113=14 | |||
| A.7=6 | |||
| B.1.1.32=4 | |||
| A=3 | |||
| B.1.36=2 | |||
| B.1.80=2 | |||
| A.3=1 | |||
| L | 22 | 19A=19 (3) | B=10 |
| B.4=3 | |||
| B.6=9 | |||
| V | 3 | 19A=3 | B.2.1=3 |
| S | 80 | 19B=71 | A=51 |
| 19A=1 | A.7=17 | ||
| 20A=1(7) | A.9=6 | ||
| A.1=2 | |||
| B.1=2 | |||
| A.2=1 | |||
| B.2=1 | |||
| G | 612 | 20A=540 | B.1=404 |
| 19A=11 | B.1.80=130 | ||
| 20B=11 | B.1.113=21 | ||
| (50) | B.1.1=15 | ||
| B.1.95=11 | |||
| B.1.5=8 | |||
| B.1.87=6 | |||
| B=5 | |||
| B.1.36=5 | |||
| B.1.11=2 | |||
| B.1.102=1 | |||
| B.1.107=1 | |||
| B.1.79=1 | |||
| B.1.86=1 | |||
| B.6=1 | |||
| GH | 533 | 20A=460 | B.1.113=337 |
| 20C=18 | B.1.36=155 | ||
| 19A=6 (49) | B.1=32 | ||
| B.1.26=6 | |||
| B.1.80=2 | |||
| B.1.1.8=1 | |||
| GR | 1115 | 20B=877 | B.1.1.32=535 |
| 20A=4 | B.1.1=382 | ||
| 19A=2 (232) | B.1.1.8=192 | ||
| B.1.1.31=3 | |||
| B.1.1.28=1 | |||
| B.1=1 | |||
| B.1.1.10=1 | |||
| Total | 3014 | 3014 | 3014 |
Bold fonts indicate the major distribution. #Clade information not available as on October 14, 2020 for the number of strains depicted in bracket. GISAID, Global Initiative on Sharing All Influenza Data; PangoLIN, Phylogenetic Assignment of Named Global Outbreak LINeages