Table II.
Synonymous and non-synonymous substitutions characterizing the dominant Phylogenetic Assignment of Named Global Outbreak LINeages (Pangolin) in India
| Pangolin lineage | Synonymous substitution | Non-synonymous substitutions | Untranslated nucleotide change | ||
|---|---|---|---|---|---|
| Nucleotide variation | Gene (amino-acid change) | Nucleotide variation | Gene (amino-acid change) | ||
| B.1.113 | C22444T | S (D294D) | C28854T | N (S194L) | - |
| B.1.1.32 | C313T | NSP1 (L16L) | C5700A | nsp3 (A994D)/ORF1ab (A1812D) | - |
| B.1.1.8 | G4354A | NSP3 (E545E)/ORF1ab (E1363E) | C6573T | nsp3 (S1285F)/ORF1ab (S2103F) | - |
| C25528T | ORF3a (L46F) | ||||
| B.1.80 | C3634T | NSP3 (N305N)/ORF1ab (N1123N) | - | ||
| C15324T | NSP12b (N619N) | ||||
| B.4 | T28688C | N (A138A) | C884T | nsp2 (R27C)/ORF1ab (R207C) | 3’UTR (G29742T) |
| G1397A | nsp2 (V198I)/ORF1ab (V378I) | ||||
| G8653T | nsp4 (M33I)/ORF1ab (M2796I) | ||||
| G11083T | nsp6 (L37F)/ORF1ab (L3606F) | ||||
| B.6 | C13730T | nsp12b (A88V) | - | ||
| C28311T | N (P13L) | ||||
| C6312A | nsp3 (T1198K)/ORF1ab (T2016K) | ||||
| G11083T | nsp6 (L37F)/ORF1ab (L3606F) | ||||