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Summary on the number of samples retained in each analyzed dataset after filtration by the minimum number of reads threshold.
| Dataset | Number of samples | Min. number of reads |
| AGP | 2,868 | 10,000 |
| UKT | 3,288 | 10,000 |
| CHN | 134 HC/75 CD | 4,000 |
| ESP | 154 HC/140 CD | 15,000 |
| NLD | 966 HC/163 CD | 15,000 |
For the IBD-related datasets (CHN, ESP, and NLD), the respective numbers are given for healthy (HC) and Crohn’s disease (CD) cohorts separately.
