Table 3.

United Kingdom.

Position	Location	Mutation	01/19/2020–01/20/2021
			Total Count	Percentage
66nt	5´UTR	C → T	2,787	3.9
204nt		G → T	20,770	29.07
241nt		C → T	69,160	96.81
445nt	ORF1ab polyprotein → leader protein	T → C	34,505	48.3
1,163nt	nsp2	A → T	2,544	3.56
1,210nt		G → T	1,440	2.02
1,513nt		C → T	1,528	2.14
1,947nt		T → C	1,576	2.21
1,987nt		A → G	3,018	4.22
3,037nt	nsp3	C → T	69,231	96.91
3,256nt		T → C	2,523	3.53
4,002nt		C → T	1,519	2.13
4,543nt		C → T	1,516	2.12
6,286nt		C → T	34,650	48.5
6,807nt		C → T	2,220	3.11
7,528nt		C → T	1,524	2.13
7,926nt		C → T	2,818	3.94
8,683nt	nsp4	C → T	2,189	3.06
9,745nt		C → T	3,640	5.1
9,802nt		G → T	1,449	2.03
10,097nt	3C‐like proteinase	G → A	2,954	4.13
10,870nt		G → T	3,186	4.46
11,083nt	nsp6	G → T	5,734	8.03
11,396nt		C → T	2,286	3.2
11,533nt		A → G	1,960	2.74
11,781nt		A → G	2,368	3.31
12,067nt	nsp7	G → T	1,709	2.39
13,536nt	RNA‐dependent RNA polymerase	C → T	1,502	2.1
14,202nt		G → T	2,522	3.53
14,408nt		C → T	69,237	96.92
14,805nt		C → T	1,860	2.6
15,406nt		G → T	2,077	2.91
18,877nt	3'‐to‐5' exonuclease	C → T	3,827	5.36
19,542nt		G → T	2,582	3.61
19,718nt	endoRNAse	C → T	2,645	3.7
20,268nt		A → G	1,999	2.8
21,255nt	2'‐O‐ribose methyltransferase	G → C	34,494	48.28
21,575nt	Spike glycoprotein	C → T	1,502	2.1
21,614nt		C → T	17,561	24.58
21,637nt		C → T	2,697	3.78
22,227nt		C → T	34,855	48.79
22,346nt		G → T	2,244	3.14
22,377nt		C → T	1,518	2.12
22,388nt		C → T	2,540	3.56
22,444nt		C → T	2,085	2.92
22,992nt		G → A	1,636	2.29
23,403nt		A → G	69,262	96.95
23,731nt		C → T	2,940	4.12
24,334nt		C → T	10,442	14.62
25,563nt	ORF3a	G → T	5,774	8.08
25,614nt		C → T	2,737	3.83
26,060nt		C → T	2,632	3.68
26,144nt		G → T	1,748	2.45
26,424nt	Envelope protein	T → C	1,957	2.74
26,735nt	Membrane glycoprotein	C → T	3,760	5.26
26,801nt		C → G	34,459	48.24
27,769nt	ORF7b	C → T	2,706	3.79
27,944nt	ORF8	C → T	25,177	35.24
28,169nt		A → G	2,693	3.77
28,854nt	Nucleocapsid phosphoprotein	C → T	3,683	5.16
28,881nt		G → A	23,975	33.56
28,882nt		G → A	23,947	33.52
28,883nt		G → C	23,946	33.52
28,932nt		C → T	34,536	48.34
29,227nt		G → T	2,566	3.59
29,366nt		C → T	1,743	2.44
29,466nt		C → T	2,578	3.61
29,555nt	At upstream downstream region of ORF10 ORF9	C → T	1,466	2.05
29,645nt	ORF10	G → T	34,684	48.55
29,771nt	3´UTR	A → G	2,475	3.46

Details of the mutant analyses of 7,144 SARS‐CoV‐2 isolates for deviations from the Wuhan reference sequence. These sequences were deposited in the GISAID initiative between 01/19/2020 and 01/20/2021. For design of Tables, see legend to Table 5.