Table 3.
Marker parameters calculated for each SSR type based on 52 primer pairs
| SSR type | NP | ANF | APF | PP (%) | PIC | Rp | MI | |
|---|---|---|---|---|---|---|---|---|
| Repeat types | Di- | 5 | 3.20 | 3.00 | 95.00% | 0.153 | 0.58 | 0.45 |
| Tri- | 18 | 3.22 | 2.89 | 89.35% | 0.225 | 1.06 | 0.64 | |
| Tetra- | 29 | 3.17 | 2.90 | 92.41% | 0.290 | 1.29 | 0.73 | |
| Number of repeats | 10 | 1 | 5.00 | 5.00 | 100.00% | 0.168 | 1.00 | 0.84 |
| 9 | 1 | 3.00 | 3.00 | 100.00% | 0.192 | 0.67 | 0.58 | |
| 8 | 2 | 3.00 | 2.50 | 87.50% | 0.126 | 0.46 | 0.27 | |
| 7 | 6 | 3.33 | 3.33 | 100.00% | 0.238 | 1.29 | 0.86 | |
| 6 | 15 | 3.27 | 2.87 | 87.22% | 0.232 | 1.06 | 0.62 | |
| 5 | 27 | 3.07 | 2.78 | 91.85% | 0.285 | 1.23 | 0.69 | |
| Total | 52 | 3.19 | 2.90 | 91.60% | 0.254 | 1.14 | 0.67 | |
NP Number of primer pairs, ANF Average number of fragments, APF Average number of polymorphic fragments, PP Percent of polymorphic fragments, PIC Polymorphic information content, Rp Resolving power, MI Marker index