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. 2021 Jun 2;109(11):1825–1835.e5. doi: 10.1016/j.neuron.2021.03.038
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-uN2CpolyG (SVEMAMNPV), Mouse Monoclonal Clone 4C4 This paper N/A
Anti-uN2CpolyG (AARPPRMH), Mouse Monoclonal Clone 4D12 This paper N/A
Anti-FLAG (DYKDDDDK) tag, Rabbit Polyclonal, Thermo Fisher Scientific Cat# PA1-984B; RRID: AB_347227
Anti-HA (YPYDVPDYA) tag, Mouse Monoclonal Clone 16B12 Abcam Cat# ab130275; RRID: AB_11156884
Anti-GFP, Rabbit Polyclonal, Abcam Cat# ab290; RRID: AB_303395
Anti-GAPDH, Mouse Monoclonal Clone GA1R Abcam Cat# ab125247; RRID: AB_11129118
Anti-Calbindin, Mouse Monoclonal Clone CB-955 Abcam Cat# ab82812; RRID: AB_1658451
Anti-Ubiquitin, Rabbit Monoclonal Recombinant EPR8830 Abcam Cat# ab134953; RRID: AB_2801561
Anti-Sumo 2 and 3, Rabbit Polyclonal Abcam Cat# ab3742; RRID: AB_304041
Anti-p62 (SQSTM1), Rabbit Monoclonal Recombinant EPR4844 Abcam Cat# ab109012; RRID: AB_2810880
Anti-MAP2, Mouse Monoclonal Clone MT-01 Abcam Cat# ab7756; RRID: AB_306050
Anti-Histone H2A.X phospho S139, Rabbit Monoclonal Recombinant EP854(2)Y Abcam Cat# ab81299; RRID: AB_1640564
Anti-Histone H2A.X, Rabbit Monoclonal Recombinant EPR22820-23 Abcam Cat# ab229914
Anti-Ku80 (XRCC5), Mouse Monoclonal Clone 5C5 Abcam Cat# ab119935; RRID: AB_10899161
Anti-Ku-70 (XRCC6), Mouse Monoclonal Clone N3H10 Santa Cruz Biotechnology Cat# sc-56129; RRID: AB_794205
Anti-GFAP, Rabbit Polyclonal, Proteintech Cat# 16825-1-AP; RRID: AB_2109646

Bacterial and virus strains

AAV2/PHP.eB CAG GFP This paper N/A
AAV2/PHP.eB CAG uN2C-GFP This paper N/A
AAV2/PHP.eB CAG uN2CpolyG-GFP This paper N/A
One Shot Stbl3 Chemically Competent E. coli Invitrogen Cat# C737303
One Shot TOP10 Chemically Competent E. coli Invitrogen Cat# C404003

Biological samples

Human skin and brain tissues Described in Table S1 N/A

Chemicals, peptides, and recombinant proteins

Lysostaphin Enzyme Protein Recombinant ProSpec Cat# ENZ-269
Histosol Plus LifeScience Products Cat# HS-100-5GL
TO-PRO-3 Iodide (642/661) - 1 mM Solution in DMSO Fisher Scientific Cat# T-3605
Lipofectamine 2000 Transfection reagent Fisher Scientific Cat# 11668019
Complete Mini EDTA-free Protease Inhibitor Cocktail Roche Cat# 11836170001
Bafilomycin A1 Sigma Cat# B1793
MG132 Sigma Cat# M8699
Doxycycline hydrochloride Sigma Cat# D3447

Critical commercial assays

Anti-GFP Magnetic beads Abcam Cat# ab193983
Anti-HA Magnetic Beads Pierce Cat# 88837
EC Prime Western Blotting Detection Reagent Sigma Cat# GERPN2236
DAB Substrate Kit Abcam Cat# ab64238
TRI Reagent (Guanidine Thiocyanate & Phenol) Merck Cat# T9424-25ML
Transcriptor High Fidelity cDNA Synthesis Kit Sigma Cat# 5081955001
LightCycler 480 SYBR Green I Master Roche Cat# 04707516001

Experimental models: Cell lines

Human: U2OS cells ATCC Cat# 300364/p489_U-2_OS; RRID: CVCL_0042
Human: HEK293 cells ATCC Cat# 300192/p777_HEK293; RRID: CVCL_0045
Mouse: GT1-7 cells ATCC Cat# SCC116; RRID: CVCL_0281
Human: U2OS T-REx TO-uN2C-GFP This paper N/A
Human: U2OS T-REx TO-uN2CpolyG-GFP This paper N/A

Experimental models: Organisms/strains

Wild type Mouse: C57BL/6J Mus musculus The Jackson, Laboratory JAX:000664, RRID: IMSR_JAX:000664

Oligonucleotides

Primer RT-qPCR GFP Forward ACGTAAACGGCCACAAGTTC This paper N/A
Primer RT-qPCR GFP Reverse AAGTCGTGCTGCTTCATGTG This paper N/A
Primer RT-qPCR RPLP0 Forward GAAGTCACTGTGCCAGCCCA This paper N/A
Primer RT-qPCR RPLP0 Reverse GAAGGTGTAATCCGTCTCCA This paper N/A

Recombinant DNA

Plasmid: pcDNA3-TetOn uN2C-GFP (12 GLY) This paper N/A
Plasmid: pcDNA3-TetOn uN2CpolyG-GFP (100 GLY) This paper N/A
Plasmid: pAAV2-CAG uN2C-GFP (12 GLY) This paper N/A
Plasmid: pAAV2-CAG uN2CpolyG-GFP (100 GLY) This paper N/A
Plasmid: pcDNA3 NOTCH2NLC Exon1-GFP Gly frame This paper N/A
Plasmid: pcDNA3 NOTCH2NLC Exon1-GFP Ala frame This paper N/A
Plasmid: pcDNA3 NOTCH2NLC Exon1-GFP Arg frame This paper N/A
Plasmid: pcDNA3 ATG GLY 70x-GFP This paper N/A
Plasmid: pcDNA3 ATG ALA 100x-GFP This paper N/A
Plasmid: pcDNA3 ATG ARG 100x-GFP This paper N/A

Software and algorithms

Fiji (ImageJ) NIH RRID: SCR_002285
Prism GraphPad RRID: SCR_005375