TABLE 1.
List of 52 genes that exhibit a significant change in both m6A level and mRNA transcript abundance in WRV compared with WSV.
| Gene name | Pattern | Chromosome | m6A level change |
mRNA level change |
||||||
| Peak annotation | Peak start | Peak end | Fold change | p-value | Strand | Fold change | p-value | |||
| TraesCS2A02G029700 | Hyper-up | chr2A | 3′ UTR | 13,251,654 | 13,251,832 | 2.0279 | 0.00302 | + | 1.7010 | 0.04004 |
| TraesCS2B02G547600 | Hyper-up | chr2B | 3′ UTR | 744,166,622 | 744,167,130 | 1.8738 | 0.00030 | − | 2.1033 | 0.00168 |
| TraesCS2D02G286300 | Hyper-up | chr2D | 3′ UTR | 365,779,571 | 365,782,391 | 2.2346 | 0.03548 | − | 11.1247 | 0.00000 |
| TraesCS5B02G031600 | Hyper-up | chr5B | 3′ UTR | 34,722,046 | 34,722,525 | 1.6426 | 0.00832 | + | 2.9500 | 0.00030 |
| TraesCS5B02G059000 | Hyper-up | chr5B | 3′ UTR | 64,731,218 | 64,732,506 | 4.9588 | 0.00000 | + | 2.1612 | 0.00161 |
| TraesCS7A02G267400 | Hyper-up | chr7A | 3′ UTR | 270,761,429 | 270,761,817 | 1.8100 | 0.04677 | + | 2.6770 | 0.01667 |
| TraesCS7A02G529900 | Hyper-up | chr7A | 3′ UTR | 709,404,773 | 709,405,192 | 2.7132 | 0.00000 | + | 2.0710 | 0.00971 |
| TraesCS7B02G441600 | Hyper-up | chr7B | 3′ UTR | 706,808,371 | 706,808,639 | 2.2191 | 0.00060 | + | 4.0297 | 0.00000 |
| TraesCS7D02G020700 | Hyper-up | chr7D | 3′ UTR | 9,303,950 | 9,304,570 | 1.5867 | 0.00417 | + | 2.1060 | 0.00767 |
| TraesCS1A02G321700 | Hyper-down | chr1A | 3′ UTR | 512,651,452 | 512,651,749 | 1.5768 | 0.02692 | + | 0.4032 | 0.00597 |
| TraesCS2A02G312600 | Hyper-down | chr2A | 3′ UTR | 537,252,891 | 537,253,188 | 1.7088 | 0.00000 | + | 0.1872 | 0.00000 |
| TraesCS2B02G486100 | Hyper-down | chr2B | 3′ UTR | 683,048,765 | 683,049,780 | 2.4116 | 0.00000 | + | 0.6119 | 0.03105 |
| TraesCS6D02G028800 | Hyper-down | chr6D | Exon | 11,091,468 | 11,091,677 | 2.2038 | 0.01122 | + | 0.4843 | 0.02553 |
| TraesCS1D02G176900 | Hypo-up | chr1D | 3′ UTR | 251,985,355 | 251,985,654 | 0.5411 | 0.00045 | + | 2.6136 | 0.01048 |
| TraesCS1D02G093300 | Hypo-up | chr1D | 3′ UTR | 79,132,968 | 79,133,298 | 0.1780 | 0.00006 | − | 3.2244 | 0.00035 |
| TraesCS1D02G140300 | Hypo-up | chr1D | 3′ UTR | 193,360,790 | 193,361,027 | 0.4931 | 0.00000 | − | 2.9749 | 0.00003 |
| TraesCS1D02G381400 | Hypo-up | chr1D | Exon | 456,287,493 | 456,287,792 | 0.0764 | 0.00000 | − | 1.8709 | 0.04330 |
| TraesCS2A02G070700 | Hypo-up | chr2A | Exon | 31,177,089 | 31,177,459 | 0.6666 | 0.00107 | + | 1.7185 | 0.03833 |
| TraesCS2B02G080700 | Hypo-up | chr2B | Exon | 45,040,125 | 45,040,185 | 0.0352 | 0.00000 | + | 2.2978 | 0.00247 |
| TraesCS2D02G117100 | Hypo-up | chr2D | 3′ UTR | 66,759,926 | 66,762,104 | 0.5263 | 0.00000 | − | 2.2422 | 0.03075 |
| TraesCS2D02G321400 | Hypo-up | chr2D | 3′ UTR | 412,833,158 | 412,833,755 | 0.6046 | 0.00000 | + | 1.7155 | 0.03374 |
| TraesCS2D02G517200 | Hypo-up | chr2D | 3′ UTR | 608,200,516 | 608,200,931 | 0.4090 | 0.00000 | + | 3.2992 | 0.00005 |
| TraesCS3A02G262100 | Hypo-up | chr3A | Exon | 485,011,350 | 485,011,560 | 0.4175 | 0.00000 | + | 2.6098 | 0.00011 |
| TraesCS3A02G335700 | Hypo-up | chr3A | Exon | 581,851,280 | 581,851,429 | 0.4118 | 0.00076 | + | 2.1840 | 0.04323 |
| TraesCS3B02G295400 | Hypo-up | chr3B | Exon | 474,028,215 | 474,028,365 | 0.2813 | 0.00000 | + | 4.5309 | 0.00000 |
| TraesCS3D02G262200 | Hypo-up | chr3D | Exon | 363,868,307 | 363,868,487 | 0.3121 | 0.00000 | + | 4.0562 | 0.00000 |
| TraesCS3D02G002700 | Hypo-up | chr3D | 3′ UTR | 1,252,991 | 1,253,291 | 0.2432 | 0.00195 | + | 26.8803 | 0.00000 |
| TraesCS4B02G327800 | Hypo-up | chr4B | 3′ UTR | 618,588,905 | 618,589,324 | 0.5363 | 0.00000 | + | 4.2774 | 0.00000 |
| TraesCS4D02G312400 | Hypo-up | chr4D | 3′ UTR | 478,267,912 | 478,268,332 | 0.5668 | 0.00000 | − | 4.6907 | 0.00000 |
| TraesCS5B02G420600 | Hypo-up | chr5B | 3′ UTR | 596,068,402 | 596,068,492 | 0.2535 | 0.00003 | − | 1.7805 | 0.03731 |
| TraesCS5B02G474500 | Hypo-up | chr5B | 3′ UTR | 647,940,529 | 647,940,947 | 0.6588 | 0.00000 | − | 2.1264 | 0.00609 |
| TraesCS5D02G475900 | Hypo-up | chr5D | 3′ UTR | 515,114,772 | 515,115,162 | 0.6134 | 0.00000 | + | 2.0456 | 0.00569 |
| TraesCS6D02G039300 | Hypo-up | chr6D | 3′ UTR | 16,199,065 | 16,199,595 | 0.6430 | 0.00000 | + | 1.9658 | 0.02814 |
| TraesCS6D02G240100 | Hypo-up | chr6D | 3′ UTR | 341,198,252 | 341,198,640 | 0.6360 | 0.00000 | + | 2.1286 | 0.00701 |
| TraesCS7B02G148800 | Hypo-up | chr7B | Exon | 196,385,349 | 196,385,469 | 0.4698 | 0.00000 | + | 2.9533 | 0.00011 |
| TraesCS7D02G341100 | Hypo-up | chr7D | 3′ UTR | 436,954,924 | 436,955,825 | 0.4633 | 0.00035 | + | 3.2187 | 0.00035 |
| TraesCSU02G111800 | Hypo-up | chrUn | 3′ UTR | 95,997,036 | 95,997,514 | 0.6164 | 0.00000 | + | 2.2411 | 0.00102 |
| TraesCSU02G111800 | Hypo-up | chrUn | Exon | 95,999,716 | 95,999,835 | 0.4897 | 0.00000 | + | 2.2411 | 0.00102 |
| TraesCS1B02G175900 | Hypo-down | chr1B | 3′ UTR | 317,422,653 | 317,423,775 | 0.6063 | 0.00525 | + | 0.4490 | 0.01475 |
| TraesCS1D02G322000 | Hypo-down | chr1D | 3′ UTR | 415,286,643 | 415,286,971 | 0.4538 | 0.00008 | + | 0.5257 | 0.04888 |
| TraesCS2A02G184500 | Hypo-down | chr2A | 3′ UTR | 144,851,567 | 144,854,464 | 0.4863 | 0.00000 | + | 0.2794 | 0.00000 |
| TraesCS2A02G166500 | Hypo-down | chr2A | Exon | 119,011,088 | 119,012,124 | 0.6462 | 0.00000 | + | 0.6063 | 0.00802 |
| TraesCS4A02G335700 | Hypo-down | chr4A | 3′ UTR | 618,174,864 | 618,175,725 | 0.3231 | 0.04266 | + | 0.0744 | 0.00000 |
| TraesCS4D02G027600 | Hypo-down | chr4D | 3′ UTR | 12,411,599 | 12,412,107 | 0.5024 | 0.01122 | − | 0.4645 | 0.03711 |
| TraesCS5B02G229300 | Hypo-down | chr5B | 3′ UTR | 406,175,027 | 406,178,578 | 0.6457 | 0.00955 | + | 0.5879 | 0.02900 |
| TraesCS5B02G535500 | Hypo-down | chr5B | Exon | 691,493,142 | 691,504,451 | 0.3585 | 0.00617 | − | 0.2018 | 0.00000 |
| TraesCS5B02G426600 | Hypo-down | chr5B | 3′ UTR | 602,340,150 | 602,340,419 | 0.4414 | 0.00081 | − | 0.5310 | 0.02180 |
| TraesCS5B02G447100 | Hypo-down | chr5B | 3′ UTR | 618,253,806 | 618,254,546 | 0.4796 | 0.00025 | − | 0.0974 | 0.00000 |
| TraesCS6A02G411800 | Hypo-down | chr6A | 3′ UTR | 613,964,281 | 613,964,788 | 0.2932 | 0.00263 | + | 0.0248 | 0.00000 |
| TraesCS6B02G069800 | Hypo-down | chr6B | Exon | 46,886,313 | 46,886,372 | 0.2755 | 0.01259 | + | 0.6555 | 0.04803 |
| TraesCS6D02G407600 | Hypo-down | chr6D | 3′ UTR | 473,094,040 | 473,094,309 | 0.5479 | 0.02399 | + | 0.3521 | 0.00003 |
| TraesCS7B02G446900 | Hypo-down | chr7B | Exon | 709,608,585 | 709,608,794 | 0.3487 | 0.00000 | + | 0.5661 | 0.00806 |