Table 2.
Example of required input format.
| frag1 | frag2 | cov_frag1 | cov_frag2 | freq | dist |
|---|---|---|---|---|---|
| chr17.140000.160000 | chr17.83160000.83180000 | 2296 | 2304 | 1 | 83020000 |
| chr17.140000.160000 | chr17.83180000.83200000 | 2296 | 2072 | 2 | 83040000 |
| chr17.140000.160000 | chr17.83200000.83220000 | 2296 | 778 | 2 | 83060000 |
| … | … | … | … | … | … |
| chr17.160000.180000 | chr17.200000.220000 | 2119 | 2253 | 12 | 40000 |
Note: ‘frag1’ and ‘frag2’: dot (‘.’) spliced chromosome, start coordinate, end coordinate of the first/second DNA fragment. ‘cov_frag1’ and ‘cov_frag2’: coverage values of frag1/2 bins. ‘freq’: raw interaction frequency between two bins. ‘dist’: the genomic distance between two bins.