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. 2021 Apr 16;30(12):1160–1171. doi: 10.1093/hmg/ddab111

Table 1.

Predictions of the possible effects of the ATP2C2 missense variant (chr16:84405221)

Computational tool Score (cut-off)a Prediction
SIFT 0.24 (0 < s < 0.05) Tolerated
Mutation assessor 1.535 (s > 3.5) Low functional impact
PROVEAN −0.399 (s ≤ −2.5) Neutral
PolyPhen-2 0.002 (0.85 < s < 1.0) Benign
MutPred 0.114 (s > 0.50) Benign
INPS-MD −0.073 (s < −0.5) Weak destabilising effect
MutationTaster 21 (s ≥ 151) Conservative

aCut-off scores (s) for predicting functional effects.