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. 2021 Feb 3;50(3-4):613–628. doi: 10.1007/s00249-021-01502-y

Table 2.

Evaluation of secondary structure evaluation at t0 and t15 and for the global model on a 25-protein test set selected by Kennard-Stone algorithm

α-helix Ordered α-helix Others β-sheet Anti//β-sheet
RMSEKS n. var ζKS RMSEKS n. var ζ KS RMSEKS n. var ζ KS RMSEKS n. var ζ KS RMSEKS n. var ζ KS
PLS t0 7.13 5 LVs 2.96 7.62 5 LVs 2.73 12.22 3 LVs 1.24 5.36 4 LVs 2.82 6.12 7 LVS 2.48
PLS t15 6.63 6 LVs 3.18 7.44 6 LVs 2.8 9.3 5 LVs 1.63 7.07 3 LVs 2.14 6.52 8 LVs 2.33
PLS tGM 6.2 5 LVs 3.4 7.22 5 LVs 2.88 10.49 4 LVs 1.45 6.15 4 LVs 2.46 7.41 5 LVs 2.05
SVM t0 6.97 3.1 7.21 2.75 10.52 1.37 4.98 3.12 5.66 2.61
SVM t15 7.42 2.91 7.3 2.71 9.98 1.44 6.47 2.4 6.62 2.23
SVM tGM 7.72 2.8 7.47 2.65 12.42 1.16 6.63 2.35 6.94 2.13
ASLR t0 7.49 4 wnbs 2.82 7.9 4 wnbs 2.63 12.54 5 wnbs 1.21 5.25 4 wnbs 2.88 5.89 4 wnbs 2.58
ASLR t15 7.07 4 wnbs 2.98 8.07 4 wnbs 2.58 10.31 5 wnbs 1.47 5.66 4 wnbs 2.67 6.2 4 wnbs 2.45
ASLR tGM 6.83 4 wnbs 3.09 7.38 4 wnbs 2.82 11.12 5 wnbs 1.37 4.95 4 wnbs 3.06 6.1 4 wnbs 2.49
STDDEVREFKS 21.1 20.82 15.18 15.12 15.2

PLS, SVM and ASLR performances on a 25-protein test set selected by Kennard-Stone algorithm in the 1720–1480 cm−1 spectral section at t0, t15 and for the global model (tGM) including spectra recorded at t0, t15, t105 and t24h. RMSEKS, error in prediction (expressed in%), ζKS = STDDEVREFKS/RMSEKS. STDDEVREFKS is the standard deviation of the secondary structure content in test set selected by the Kennard-Stone algorithm. The optimal number of LVs (latent variables) for PLS and wvnbs (wavenumbers) for ASLR are reported