Table 2.
Evaluation of secondary structure evaluation at t0 and t15 and for the global model on a 25-protein test set selected by Kennard-Stone algorithm
α-helix | Ordered α-helix | Others | β-sheet | Anti//β-sheet | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
RMSEKS | n. var | ζKS | RMSEKS | n. var | ζ KS | RMSEKS | n. var | ζ KS | RMSEKS | n. var | ζ KS | RMSEKS | n. var | ζ KS | |
PLS t0 | 7.13 | 5 LVs | 2.96 | 7.62 | 5 LVs | 2.73 | 12.22 | 3 LVs | 1.24 | 5.36 | 4 LVs | 2.82 | 6.12 | 7 LVS | 2.48 |
PLS t15 | 6.63 | 6 LVs | 3.18 | 7.44 | 6 LVs | 2.8 | 9.3 | 5 LVs | 1.63 | 7.07 | 3 LVs | 2.14 | 6.52 | 8 LVs | 2.33 |
PLS tGM | 6.2 | 5 LVs | 3.4 | 7.22 | 5 LVs | 2.88 | 10.49 | 4 LVs | 1.45 | 6.15 | 4 LVs | 2.46 | 7.41 | 5 LVs | 2.05 |
SVM t0 | 6.97 | 3.1 | 7.21 | 2.75 | 10.52 | 1.37 | 4.98 | 3.12 | 5.66 | 2.61 | |||||
SVM t15 | 7.42 | 2.91 | 7.3 | 2.71 | 9.98 | 1.44 | 6.47 | 2.4 | 6.62 | 2.23 | |||||
SVM tGM | 7.72 | 2.8 | 7.47 | 2.65 | 12.42 | 1.16 | 6.63 | 2.35 | 6.94 | 2.13 | |||||
ASLR t0 | 7.49 | 4 wnbs | 2.82 | 7.9 | 4 wnbs | 2.63 | 12.54 | 5 wnbs | 1.21 | 5.25 | 4 wnbs | 2.88 | 5.89 | 4 wnbs | 2.58 |
ASLR t15 | 7.07 | 4 wnbs | 2.98 | 8.07 | 4 wnbs | 2.58 | 10.31 | 5 wnbs | 1.47 | 5.66 | 4 wnbs | 2.67 | 6.2 | 4 wnbs | 2.45 |
ASLR tGM | 6.83 | 4 wnbs | 3.09 | 7.38 | 4 wnbs | 2.82 | 11.12 | 5 wnbs | 1.37 | 4.95 | 4 wnbs | 3.06 | 6.1 | 4 wnbs | 2.49 |
STDDEVREFKS | 21.1 | 20.82 | 15.18 | 15.12 | 15.2 |
PLS, SVM and ASLR performances on a 25-protein test set selected by Kennard-Stone algorithm in the 1720–1480 cm−1 spectral section at t0, t15 and for the global model (tGM) including spectra recorded at t0, t15, t105 and t24h. RMSEKS, error in prediction (expressed in%), ζKS = STDDEVREFKS/RMSEKS. STDDEVREFKS is the standard deviation of the secondary structure content in test set selected by the Kennard-Stone algorithm. The optimal number of LVs (latent variables) for PLS and wvnbs (wavenumbers) for ASLR are reported