Fig. 1.

Phylogenetic inference of LES genomes and 390 genomes from a previous study representative of the wider Pseudomonas aeruginosa population. The tree was constructed with IQ-TREE [43] maximum likelihood, the HKY85 substitution model and 1000 ultra-fast bootstrap support replicates from a relaxed core fragment supermatrix (500 bp fragments present in >=95% of genomes) with 429463 informative sites. The tree was visualized by GrapeTree [48] with branches log-transformed and nodes collapsed and coloured by MLST. MLSTs are included in the key for those represented by two or more genomes