Table 1.
Properties of strains carrying a Tn6171 transposon or variant
Complete genomes are highlighted in grey.
|
Strain |
Year |
Country |
Source |
ST |
GC |
Tn6171 variant |
Size (bp) |
TSD |
glmS allele |
GenBank acc. no. |
|---|---|---|---|---|---|---|---|---|---|---|
|
D36 |
2008 |
Australia |
Wound |
81 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
|
|
6013150 |
2007 |
UK |
Skin |
81 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
ACYQ |
|
6013113 |
2007 |
UK |
Skin |
81 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
ACYR |
|
MRSN 3527 |
2011 |
USA |
Wound |
81 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
JPHZ |
|
PR332 |
nr |
USA |
nr |
81 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
NGDV |
|
ABS029 |
2012 |
Iran |
Wound |
328 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
WIOH |
|
ABS062 |
2012 |
Iran |
Wound |
328 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
WIOF |
|
ABS063 |
2012 |
Iran |
Wound |
328 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
WIOE |
|
ABS122 |
2013 |
Iran |
Wound |
328 |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
WIOA |
|
ABS201 |
2013 |
Iran |
Wound |
328* |
1 |
Tn6171 |
49 915 |
AAGGC |
1 |
VJZY |
|
R1B |
2011 |
Saudi Arabia |
nr |
1 |
1 |
Tn6171 |
49 915† |
AAGGC |
1 |
JICK |
|
AB4052 |
2016 |
USA |
Wound |
2 |
2 |
Tn6171 |
49 915† |
AAGGC |
623 |
LRED |
|
Pesh-31 |
2015 |
Pakistan |
Pus |
2 |
2 |
Tn6171 |
49 915† |
AAGGC |
623 |
QQQA |
|
ABBL062 |
2008 |
USA |
Blood |
2 |
2 |
Tn6171 |
49 915† |
AAGGC |
623 |
LLFH |
|
ABBL040 |
2007 |
USA |
Blood |
2 |
2 |
Tn6171 |
49 915† |
AAGGC |
623 |
LLDU |
|
MRSN6273 |
2012 |
USA |
Sputum |
94‡ |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
LNCY |
|
MRSN6269 |
2012 |
USA |
Sputum |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
LNCX |
|
MRSN5540 |
2011 |
USA |
Blood |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
LNCW |
|
MRSN3941 |
2011 |
USA |
Wound |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
LNCV |
|
MRSN4106 |
2011 |
USA |
Wound |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
JPHX |
|
MRSN3942 |
2011 |
USA |
Wound |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
JPHY |
|
MRSN3405 |
2011 |
USA |
Wound |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
JNOU |
|
MRSN4119 |
2011 |
USA |
Wound |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
LNBZ |
|
600 |
2011 |
UK |
nr |
94 |
1 |
Tn6171§ |
49 915† |
AAGGC |
623 |
CBXD |
|
ARLG1323 |
<2017 |
nr |
nr |
10 |
– |
Tn6171§ |
49 915† |
AAGGC |
10 |
NGHP |
|
AbPK1 |
2012 |
Pakistan |
Sheep lung|| |
2 |
2 |
Tn6171::ISAba1¶ |
51 200 |
AAGGC |
2 |
|
|
5457 |
<2019 |
India |
nr |
623** |
1 |
Tn6171-v1†† |
49 124 |
AAGGC |
623 |
|
|
ZQ3 |
2016 |
Iraq |
Blood |
717 |
1 |
Tn6171-v1 |
49 124† |
AAGGC |
1 |
PHJZ |
|
G21 |
2011 |
Australia |
nr |
2 |
2 |
Tn6171-v1 |
49 124† |
AAGGC |
623 |
UCOP |
|
AB309 |
2013 |
Saudi Arabia |
Blood |
2 |
2 |
Tn6171-v1 |
49 124† |
ACTAG |
2 |
LXTY |
|
AB552 |
2013 |
Saudi Arabia |
Blood |
2 |
2 |
Tn6171-v1 |
49 124† |
ACTAG |
2 |
LXUE |
|
VB2486 |
2019 |
India |
Sputum |
1 |
1 |
Tn6171-v2 |
52 602 |
ACAGC |
437 |
|
|
VB24319 |
2017 |
India |
Blood |
1 |
1 |
Tn6171-v2 |
52 602† |
ACAGC |
437 |
RHLV |
|
VB29123 |
2017 |
India |
Blood |
1 |
1 |
Tn6171-v2 |
52 602† |
ACAGC |
437 |
RBVT |
*ST328 is a single locus variant of ST81 within GC1.
†Estimated.
‡ST94 is a double locus variant of ST1.
§Includes an extra 8 bp repeat unit in the segment between IS1236-var and ISAba12.
||Sheep bronchoalveolar lavage.
¶Contains an ISAba1 copy and a repeat sequence of 120 bp, in the middle of the segment between ISAba12 and ∆IS123-var, consisting of 15×8 bp units. D36 includes only three units (of 8 bp).
**ST623 is a single locus variant of ST1 representing the majority of GC1 strains.
††Tn6171-v1 includes a 610 bp ISAba12-mediated deletion.
nr, Not recorded.