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. Author manuscript; available in PMC: 2022 Apr 1.
Published in final edited form as: J Comp Neurol. 2020 Aug 31;529(5):1066–1080. doi: 10.1002/cne.25004

TABLE 1.

Circadian associated DNA binding factors and corresponding binding sequences

Binding site Description DNA binding sequence
E-box E-boxes are CLOCK:BMAL1 binding sites central to molecular circadian clock function (Buhr & Takahashi, 2013; Lowrey & Takahashi, 2011). 5′-CACGTG-3′
5′-CACGTT-3′
(Lowrey & Takahashi, 2011)
D-box D-boxes are binding sites for DBP, a transcription which oscillates with the circadian clock (Ueda et al., 2005) 5′-TTAYGTAA-3′
(Ueda et al., 2005)
RORE element RORE elements are Rev-erbα binding sites (Harding & Lazar, 1993) 5′-RGGTCA-3′
(Harding & Lazar, 1993).
CRE element Cyclic AMP response elements are binding sites for cAMP, which is commonly associated with the circadian clock (Carlezon, Duman, & Nestler, 2005) 5′-TGACGTCA-3′
(Carlezon et al., 2005)