TABLE 1.
Circadian associated DNA binding factors and corresponding binding sequences
| Binding site | Description | DNA binding sequence |
|---|---|---|
| E-box | E-boxes are CLOCK:BMAL1 binding sites central to molecular circadian clock function (Buhr & Takahashi, 2013; Lowrey & Takahashi, 2011). | 5′-CACGTG-3′ 5′-CACGTT-3′ (Lowrey & Takahashi, 2011) |
| D-box | D-boxes are binding sites for DBP, a transcription which oscillates with the circadian clock (Ueda et al., 2005) | 5′-TTAYGTAA-3′ (Ueda et al., 2005) |
| RORE element | RORE elements are Rev-erbα binding sites (Harding & Lazar, 1993) | 5′-RGGTCA-3′ (Harding & Lazar, 1993). |
| CRE element | Cyclic AMP response elements are binding sites for cAMP, which is commonly associated with the circadian clock (Carlezon, Duman, & Nestler, 2005) | 5′-TGACGTCA-3′ (Carlezon et al., 2005) |