Table 2.
Variability of four hyper-variable markers and the universal chloroplast DNA barcodes (rbcL, matK and trnH-psbA) in Lagerstroemia
Markers | Length | Variable sites | Information sites | Nucleotide diversity | ||
---|---|---|---|---|---|---|
Numbers | % | Numbers | % | |||
trnD-trnY-trnE | 1,051 | 38 | 3.62 % | 36 | 3.43 % | 0.01953 |
rrn16-trnI | 1,229 | 56 | 4.56 % | 51 | 4.15 % | 0.02040 |
ndhF-rpl32-trnL | 947 | 56 | 5.91 % | 53 | 5.60 % | 0.01848 |
ycf1 | 827 | 41 | 4.96 % | 36 | 4.35 % | 0.01890 |
Combine four variable markers | 4,054 | 191 | 4.71 % | 176 | 4.34 % | 0.01941 |
rbcL | 1,428 | 14 | 0.98 % | 14 | 0.98 % | 0.00395 |
matK | 1,500 | 24 | 1.60 % | 24 | 1.60 % | 0.00636 |
trnH-psbA | 138 | 17 | 12.32 % | 16 | 11.59 % | 0.06441 |
Combine three universial markers | 3,066 | 55 | 1.79 % | 54 | 1.76 % | 0.00770 |