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Characteristics of the six different data sets
| Dataset | Composition | Total number of characters (bp) | Variable sites (bp) | Parsimony-informative sites (bp) | Singleton sites (bp) |
|---|---|---|---|---|---|
| 1 | Nucleotide sequences of all 82 genes | 71,424 | 628 | 514 | 114 |
| 2 | Complete chloroplast genome sequences (deletion some sites according to the outgroups ) | 151,431 | 1,910 | 1,694 | 216 |
| 3 | Complete chloroplast genome sequences | 154,185 | 2,029 | 1,821 | 205 |
| 4 | LSC | 85,125 | 1,199 | 1,058 | 141 |
| 5 | IR | 25,998 | 170 | 156 | 14 |
| 6 | SSC | 17,065 | 488 | 434 | 54 |
