Table 1.

Step by Step Guides to Performing ATAC-seq Data Analysis

Title and author	Notes and link
ATAC-seq data analysis: from FASTQ to peaks	Blog style walkthrough of generalized ATAC-seq data analysis.
Yiwei Niu
Last updated: 2019	https://yiweiniu.github.io/blog/2019/03/ATAC-seq-data-analysis-from-FASTQ-to-peaks/
BIOINF525 Lab 3.2	Minimal standard ATAC-seq analysis walkthrough.
Steve Parker
Last updated: 2016	https://github.com/ParkerLab/
Analysis of ATAC-seq data in R and Bioconductor	Bioconductor ATAC-seq analysis course.
Rockefeller Bioinformatics Resource
Last updated: 2018	https://rockefelleruniversity.github.io/RU_ATACseq/
ATAC-seq	Generalized ATAC-seq analysis walkthrough with included custom scripts.
John M. Gaspar
Last updated: 2019	https://github.com/harvardinformatics/ATAC-seq
ATAC-seq data analysis	Galaxy training walkthrough of generalized ATAC-seq analysis.
Delisle L; Doyle M; & Heyl F
Last updated: 2020	https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/atac-seq/tutorial.html