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ATAC-seq Advanced Quality Control Metric Tools
| Languages | Notes | Docs | Citation | |
|---|---|---|---|---|
| ATAqC | Bash; Python | Generate ATAC-seq specific quality control metrics. | + | Unpublished Last updated: 2017 |
| ATACseqQC | R | Provides ATAC-seq specific quality control metrics and transcription factor footprinting. | +++ |
Ou et al. (2018) Last updated: 2018 |
| ataqv | C++; Bash | ATAC-seq QC and visualization. | +++ |
Orchard, Kyono, Hensley, Kitzman, & Parker (2020) Last updated: 2020 |
