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Tools to Investigate Nucleosome Positioning
| Languages | Notes | Docs | Citation | |
|---|---|---|---|---|
| HMMRATAC | Java | Identify nucleosome positioning and leverage ATAC-seq specific read outs to call peaks. | +++ |
Tarbell & Liu (2019) Last updated: 2020 |
| NucleoATAC | Python; R | Call nucleosomes using ATAC-seq data. | +++ |
Schep et al. (2015) Last updated: 2019 |
| NucTools | Perl; R | Calculate nucleosome occupancy profiles on chromatin accessibility data. | +++ |
Vainshtein et al. (2017) Last updated: 2019 |
