Figure 5.

Data exploration. A screenshot of the IAMA session in the UCSC genome browser is shown. From the top, GENCODE annotation, Mandalorion Isoforms, Smart-seq2 based gene expression (bar graphs), Smart-seq2 (histogram), and R2C2 reads. Highlighted are Smart-seq2 and R2C2 reads for just one replicate and two conditions to demonstrate the IAMA browser session and for space-saving purposes. The complete IAMA session for both replicates and all TLR-activated conditions are available here (https://genome.ucsc.edu/s/vollmers/IAMA). IAMA, Isoform-level transcriptome Atlas of Macrophage Activation; TLR, toll-like receptor.