Table 1.
Statistics for Cac genome assembly v2.4 and C. acuminata assembly V3.0.
| Cac genome assembly v2.4 (ALLPATHS-LG + SOAP GapCloser) | C. acuminata V3.0 (FALCON + Quiver + Pilon + Hi-C) | |
|---|---|---|
| Sequencing platform | Illumina HiSeq 2000 | PacBio Sequel |
| Assembly size (bp) | 403,174,860 | 414,951,143 |
| GC % | 32.83 | 32.87 |
| Number of scaffolds | 1394 | 775 |
| Scaffold N50 size (bp) | 1,751,747 | 18,276,129 |
| Scaffold N90 size (bp) | 431,274 | 12,137,589 |
| Number of contigs | 5219 | 1130 |
| Contig N50 size (bp) | 194,584 | 1,473,707 |
| Contig N90 size (bp) | 50,104 | 351,195 |
| Gap % | 0.94 | 0.01 |
| Longest sequence length (bp) | 8,423,530 | 39,282,906 |