Table 2.
Recombination events of CK/CH/SCMY/160315 as assessed using 7 different methods within the RPD4 software.
Breakpoints |
Major | Minor |
P value of the detection methods |
||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Recombinant event | Beginning | Ending | (Similarity) | (Similarity) | RDP | GENECONV | BootScan | MaxChi | Chimaera | SiScan | 3Seq |
1 | 9 | 5,870 | H120(97.8%) | 4/91(99.8%) | 5.993 × 10−120 | 1.443 × 10−116 | 5.492 × 10−58 | 2.087 × 10−39 | 1.114 × 10−38 | 1.968 × 10−26 | 1.866 × 10−66 |
2 | 16,351 | 22,884 | 4/91(94.2%) | LDT3-A(99.7%) | NS | 2.428 × 10−306 | NS | 2.876 × 10−21 | 3.130 × 10−76 | 3.733 × 10−99 | 2.470 × 10−322 |
3 | 22,885 | 23,810 | LDT3-A(86.5%) | 4/91(99.8%) | 1.003 × 10−57 | 2.501 × 10−65 | 3.398 × 10−65 | 2.427 × 10−16 | 2.384 × 10−16 | 8.575 × 10−18 | NS |
4 | 23,811 | 24,175 | H120(89.9%) | LDT3-A(97.3%) | 1.228 × 10−24 | 8.905 × 10−24 | 9.431 × 10−24 | 1.843 × 10−18 | 5.718 × 10−17 | 3.337 × 10−25 | 2.220 × 10−15 |
5 | 24,155 | 25,911 | 4/91(92.4%) | LJL/08-1(97%) | 6.599 × 10−85 | 9.441 × 10−70 | 2.080 × 10−87 | 1.860 × 10−26 | 1.279 × 10−03 | 2.913 × 10−32 | 2.828 × 10−48 |
6 | 26,594 | 27,083 | LDT3-A(90.1%) | 4/91(99.6%) | NS | 9.947 × 10−15 | 3.247 × 10−17 | 5.360 × 10−08 | 1.336 × 10−04 | 8.825 × 10−14 | 3.515 × 10−02 |