TABLE 9.
Number of PRDM9 motifs located in the repeat elements distributed from RNF5 to RING1 in the extended MHC II genomic region.
| RepName | RepClass | RepFamily | Number of PRDM9 motifs |
|||
| CCTCCCCT | AGGGGAGG | ATCCATG | CATGGAT | |||
| Charlie1a | DNA | hAT-Charlie | 1 | 1 | ||
| MamRep38 | DNA | hAT | 1 | |||
| MER1 | DNA | hAT-Charlie | 1 | 1 | ||
| MER2 | DNA | TcMar-Tigger | 2 | 1 | ||
| MER6 | DNA | TcMar-Tigger | 1 | |||
| MER44 | DNA | TcMar-Tigger | 1 | 2 | ||
| Tigger2 | DNA | TcMar-Tigger | 1 | 1 | 2 | |
| MER91 | DNA | hAT-Tip100 | 1 | |||
| ORSL | DNA | hAT-Tip100 | 1 | |||
| L1 | LINE | L1 | 4 | 2 | 29 | 21 |
| L2 | LINE | L2 | 2 | 2 | 2 | |
| L3 | LINE | CR1 | 1 | |||
| HERVFH19-int | LTR | ERV1 | 1 | |||
| HUERS-P2-int | LTR | ERV1 | 1 | |||
| LTR12 | LTR | ERV1 | 1 | |||
| MER4 | LTR | ERV1 | 1 | 1 | ||
| MER52 | LTR | ERV1 | 1 | |||
| MER11 | LTR | ERVK | 2 | |||
| HERVK3-int | LTR | ERVK | 1 | |||
| MLT2 | LTR | ERVL | 1 | |||
| MLT1 | LTR | ERVL-MaLR | 2 | 1 | ||
| Alu | SINE | Alu | 1 | 2 | 3 | 1 |
| MIR | SINE | MIR | 2 | 5 | 3 | 1 |
| MamSINE1 | SINE | tRNA-RTE | 1 | |||
| Simple_repeat | 5 | 2 | 2 | 3 | ||
| G-rich, GA-rich | Low_complexity | 2 | ||||
| Non-repeat region | 12 | 22 | 21 | 22 | ||
| Total number of copies | 31 | 44 | 67 | 62 | ||