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. 2021 Jun 12;135:104568. doi: 10.1016/j.compbiomed.2021.104568

Table 4.

MM/GBSA binding free energy change profiles of known Mpro inhibitors and selected top five fungal metabolites with SARS-CoV2-Mpro docked complexes.

Ligand ΔGBind (Kcal/mol) ΔGCoulomb (Kcal/mol) ΔGHbond (Kcal/mol) ΔGLipo (Kcal/mol) ΔGPacking (Kcal/mol) ΔGvdW (Kcal/mol)
Known Mpro inhibitors interacting with SARS-CoV2-Mpro
N1 −35.02 −32.35 −4.62 −17.29 −0.49 −64.78
11b −65.58 −49.74 −3.29 −14.46 −4.60 −49.15
11a −60.92 −42.28 −3.17 −16.51 −2.93 −57.49
N9 −36.31 −40.27 −4.02 −12.25 0 −44.89
N3 −65.95 −44.61 −3.83 −16.15 −0.77 −70.46
Top five fungal metabolites interacting with SARS-CoV2-Mpro
Poh 3 −28.28 −37.25 −7.09 −14.52 0 −54.88
Epi-phelligrin A −35.71 −18.48 −3.29 −11.17 −2.37 −33.34
Sterenin M −49.57 −39.75 −3.71 −10.71 −2.24 −49.98
Termitomycamide B −39.62 −32.31 −1.96 −17.02 −2.79 −50.23
Enokipodin D −34.52 −15.43 −0.83 −09.17 0 −31.14

Note, meaning of abbreviations used in the table are as follows.

Coulomb—Coulomb energy.

Hbond—Hydrogen-bonding correction.

Lipo—Lipophilic energy.

Packing—Pi-Pi packing correction.

vdW—Van der Waals energy.