Table 1.
Comparison between the sequence conservation of the SSE classes (quantified by average information content) and the position of the substrate recognition sites from references17,18.
SSE label | Residue range (in 2nnj) | Heme | Average information content | Gotoh 1992 | Zawaira et al. 2011 |
---|---|---|---|---|---|
K″ | 409–412 | 2.18 | |||
β1-5 | 96–97 | ✓ | 2.06 | ||
β6-1 | 362 | 1.98 | |||
K | 346–359 | ✓ | 1.98 | SRS 5 | SRS 5 |
β6-2 | 477 | 1.87 | |||
β3-1 | 164 | 1.84 | |||
L′ | 464–466 | 1.77 | |||
L | 438–455 | ✓ | 1.76 | ||
J | 317–331 | 1.76 | |||
K′ | 391–396 | 1.70 | |||
J′ | 339–345 | 1.67 | |||
C | 117–131 | 1.67 | SRS 1 | ||
β5-1 | 274 | 1.61 | |||
β1-4 | 368–369 | ✓ | 1.60 | SRS 5 | SRS 5 |
β3-3 | 456–459 | 1.55 | |||
β2-1 | 374–376 | 1.55 | |||
I | 284–316 | ✓ | 1.54 | SRS 4 | SRS 4 |
β5-2 | 280 | 1.53 | |||
β1-2 | 72–77 | 1.51 | SRS 1'b | ||
β2-2 | 379–381 | 1.49 | |||
G′ | 220–226 | 1.47 | SRS 2 | ||
B | 80–90 | 1.43 | |||
β3-2 | 485–489 | 1.41 | |||
F′ | 211–219 | 1.38 | SRS 2 | ||
H | 263–274 | 1.37 | |||
β1-3 | 386–389 | 1.35 | |||
β1-1 | 64–69 | 1.31 | SRS 1'b | ||
E | 166–183 | 1.22 | |||
β1-0 | 32 | 1.20 | |||
D | 141–159 | 1.20 | |||
B″ | 112–114 | ✓ | 1.20 | ||
β4-2 | 478–479 | 1.18 | SRS 6 | ||
A′ | 42–44 | 1.18 | SRS 1'a | ||
A | 50–61 | 1.12 | |||
G | 227–254 | 1.04 | SRS 3 | SRS 3 | |
F | 192–209 | 0.86 | SRS 2 | SRS 2 | |
B′ | 101–107 | ✓ | 0.73 | SRS 1 | SRS 1 |
β4-1 | 473–474 | 0.70 | SRS 6 | SRS 6 |
The SSEs are sorted from the most conserved to the most variable. The “Heme” column marks the SSEs with any atom within 8 Å from the heme cofactor.