Table 1.
Variant Database | Database Description | Web Site | Reference |
---|---|---|---|
ClinVar | ClinVar aggregates information about genomic variation and its relationship to human health. | http://www.ncbi.nlm.nih.gov/clinvar (accessed on 1 May 2021) | [1] |
COSMIC | Manually curated resource of somatic mutation of human cancers. |
https://cancer.sanger.ac.uk/cosmic (accessed on 1 May 2021) |
[19] |
dbSNP | Database of human single nucleotide variations, microsatellites, and small insertions and deletions for both common variations and clinical mutations. | http://www.ncbi.nlm.nih.gov/snp (accessed on 1 May 2021) | [20] |
UniProt
humsvar |
Lists of missense variants annotated in UniProtKB/Swiss-Prot human entries. The variant classification should not be considered for clinical and diagnostic use. | https://www.uniprot.org/docs/humsavar (accessed on 1 May 2021) | [21] |
ICGC Data Portal | The ICGC Data Portal provides many tools for visualizing, querying, and downloading cancer data. |
https://dcc.icgc.org/ (accessed on 1 May 2021) |
[22] |
OMIM | Online Catalog of Human Genes and Genetic Disorders. |
http://www.omim.org (accessed on 1 May 2021) |
[23] |
GDC | The GDC Data Portal provides access to GDC harmonized data as well as an archive of legacy data from TCGA and other NCI programs. | https://portal.gdc.cancer.gov/ (accessed on 1 May 2021) | [24] |