. 2021 May 21;22(11):5454. doi: 10.3390/ijms22115454

Table 2.

(A–B) Bacterial relative abundances (mean ± SD) of taxonomic groups that were significantly different between diet groups. Identical superscript letters indicate significant differences among treatments according to Benjamini-Hochberg FDR correction. Individual p values are reported in the text and in Table S2.

[A]	Diet
	CF	CV	H10	H30	H60	P30	P60	H10P50
Phylum
Actinobacteria	0.51 ± 0.67	0.52 ± 0.46	2.62 ± 4.26	4.89 ± 4.23	6.29 ± 5.49 ^a	0.48 ± 0.53	0.23 ± 0.32 ^a	0.87 ± 0.65
Bacteroidetes	1.00 ± 1.22	0.41 ± 0.69	0.03 ± 0.06	0.72 ± 1.11	0.09 ± 0.09 ^a	1.35 ± 1.26 ^a	0.75 ± 0.82	0.77 ± 0.91
Fusobacteria	13.50 ± 29.88 ^a–g	<0.0001^a	<0.0001 ^b	<0.0001^c	<0.0001 ^d	<0.0001 ^e	<0.0001 ^f	0.002 ± 0.01 ^g
Class
Erysipelotrichi	0.04 ± 0.06	0.002 ± 0.01 ^ab	0.34 ± 0.37	0.91 ± 0.80 ^a	1.11 ± 1.07 ^b	0.58 ± 0.17	0.04 ± 0.10	0.18 ± 0.31
Fusobacteriia	13.50 ± 29.88 ^a	<0.0001	<0.0001 ^a	<0.0001	<0.0001	<0.0001	<0.0001	0.002 ± 0.01
Gammaproteobacteria	7.72 ± 7.05	14.02 ± 14.53^a	10.76 ± 10.82	6.47 ± 6.36	2.61 ± 2.74 ^a	17.20 ± 15.41	8.52 ± 5.00	7.59 ± 6.12
Order
Actinomycetales	0.49 ± 0.66	0.31 ± 0.29	2.50 ± 4.29 ^a	4.83 ± 4.14 ^b	6.25 ± 5.46	0.45 ± 0.52	0.20 ± 0.33 ^ab	0.85 ± 0.65
Bacteroidales	1.00 ± 1.22	0.25 ± 0.55	0.03 ± 0.06	0.69 ± 1.13	0.04 ± 0.05 ^a	1.14 ± 1.05 ^a	0.69 ± 0.83	0.47 ± 0.52
Erysipelotrichales	0.04 ± 0.06	0.002 ± 0.001 ^abc	0.34 ± 0.37 ^a	0.91 ± 0.80 ^bde	1.11 ± 1.07 ^cf	0.06 ± 0.17 ^df	0.04 ± 0.10 ^e	0.18 ± 0.31
Fusobacteriales	13.50 ± 29.88 ^abc	<0.0001	<0.0001 ^a	<0.0001 ^b	<0.0001	<0.0001 ^c	<0.0001 ^d	0.002 ± 0.01
Pseudomonadales	3.61 ± 2.94	10.08 ± 11.47^a	7.17 ± 7.51	3.56 ± 3.40	1.54 ± 1.88 ^a	9.40 ± 8.19	5.06 ± 3.65	4.72 ± 3.73
Family
Actinomycetaceae	0.10 ± 0.19	0.05 ± 0.16^abcd	1.57 ± 2.70 ^aef	3.16 ± 2.86 ^bgh	4.66 ± 3.93 ^cil	0.02 ± 0.06 ^egim	<0.0001 ^fhln	0.52 ± 0.40 ^dmn
Corynebacteriaceae	0.10 ± 0.20	0.002 ± 0.007	0.32 ± 0.40 ^a	0.41 ± 0.53	0.47 ± 0.63	<0.0001 ^a	0.004 ± 0.01	0.09 ± 0.12
Bacillaceae	0.31 ± 0.33	0.35 ± 0.70	1.79 ± 2.73 ^a	3.83 ± 3.28	6.59 ± 5.60	0.30 ± 0.35	0.18 ± 0.26 ^a	0.94 ± 0.74
Paenibacillaceae	<0.0001	<0.0001 ^a	0.06 ± 0.11	0.21 ± 0.26	0.20 ± 0.28 ^a	0.02 ± 0.07	<0.0001	0.02 ± 0.06
Clostridiaceae	0.16 ± 0.18	<0.0001 ^a	0.09 ± 0.23	0.31 ± 0.29	0.24 ± 0.28 ^a	0.22 ± 0.42	0.26 ± 0.49	0.34 ± 0.62
Eubacteriaceae	<0.0001	<0.0001 ^a	0.16 ± 0.31	0.12 ± 0.18 ^bc	0.19 ± 0.22 ^a	<0.0001 ^b	<0.0001 ^c	0.02 ± 0.05
Erysipelotrichaceae	0.04 ± 0.06	0.002 ± 0.01 ^ab	0.34 ± 0.37 ^a	0.91 ± 0.81 ^cd	1.11 ± 1.07 ^b	0.06 ± 0.17 ^c	0.04 ± 0.10 ^d	0.18 ± 0.31
Fusobacteriaceae	13.49 ± 29.88 ^a	<0.0001	<0.0001 ^a	<0.0001	<0.0001	<0.0001	<0.0001	<0.0001
[B]	Diet
	CF	CV	H10	H30	H60	P30	P60	H10P50
Genus
Actinomyces	0.10 ± 0.18	0.05 ± 0.16 ^abcd	1.58 ± 2.70 ^aef	3.16 ± 2.86 ^bgh	4.66 ± 3.98^cil	0.02 ± 0.06 ^egi	<0.0001 ^fhlm	0.52 ± 0.39 ^dm
Oceanobacillus	0.06 ± 0.14	0.04 ± 0.11 ^ab	0.63 ± 1.03 ^cd	1.75 ± 1.54 ^aef	2.94 ± 2.58 ^bgh	<0.0001 ^ceg	<0.0001 ^dfh	0.35 ± 0.37
Bacillus	0.16 ± 0.14	0.07 ± 0.14 ^a	1.16 ± 1.75	2.08 ± 1.96	3.60 ± 3.09 ^a	0.25 ± 0.27	0.18 ± 0.26	0.51 ± 0.44
Pseudoramibacter Eubacterium	<0.0001	<0.0001 ^a	0.16 ± 0.31	0.12 ± 0.18	0.19 ± 0.22 ^bc	<0.0001^b	<0.0001 ^ac	0.02 ± 0.05
Dorea	0.03 ± 0.04	<0.0001 ^abcd	1.05 ± 1.72 ^ae	2.26 ± 1.89 ^bf	1.99 ± 1.71 ^cg	0.08 ± 0.25	0.09 ± 0.26 ^efgh	0.71 ± 0.79 ^dh
Paeniclostridium	0.05 ± 0.05	<0.0001 ^a	0.05 ± 0.13	0.04 ± 0.08	0.02 ± 0.07	0.05 ± 0.10	0.36 ± 0.39	0.77 ± 1.35 ^a
Erysipelothrix	0.04 ± 0.06	<0.0001 ^ab	0.21 ± 0.41	0.80 ± 0.63 ^acd	0.89 ± 0.79 ^bef	<0.0001 ^ce	0.01 ± 0.03 ^df	0.13 ± 0.30
Enterococcus	0.06 ± 0.09	0.15 ± 0.27 ^ab	3.09 ± 4.70 ^bfg	6.48 ± 5.12 ^cdf	6.68 ± 5.45 ^eg	0.10 ± 0.21 ^c	0.17 ± 0.20 ^ade	0.62 ± 0.81
Cetobacterium	13.44 ± 29.91 ^a	<0.0001	<0.0001 ^a	<0.0001	<0.0001	<0.0001	<0.0001	<0.0001
Pseudomonas	3.48 ± 2.85	9.80 ± 11.06 ^a	6.36 ± 6.69	3.38 ± 3.10	1.53 ± 1.89 ^a	8.94 ± 7.85	4.99 ± 3.67	4.56 ± 3.65