Table 4.
Significant variants with low minor allele frequency were additionally identified, mainly in cancer patients. The last three columns show the number of the samples with these variants in all groups, only in cancer groups, and only in CP. Number in cancer and CP in this table means number of samples that carry this variant.
| SNV BP | Rs Id | Gene | No. in Cancer n | No. in CP n | Additional Association |
|---|---|---|---|---|---|
| 11:77616654 | CLNS1A | 29 | 3 | ||
| 11:77616653 | CLNS1A | 29 | 3 | ||
| 6:31581779 | rs3093553 | LTB | 23 | 4 | Another GWAS study with breast cancer, PMID: 23095343 & 21523452 |
| 5:140535437 | ANKHD1 | 23 | 3 | ||
| 7:36707016 | AOAH | 22 | 2 | ||
| 9:34634803 | SIGMAR1 | 21 | 1 |