COVID-19 |
Coronavirus disease 2019 |
PCR |
polymerase chain reaction |
RT-PCR |
Reverse transcription PCR |
RT-qPCR |
Reverse transcription quantitative PCR |
RT-dPCR |
Reverse transcription digital PCR |
RT-ddPCR |
Reverse transcription droplet digital PCR |
RT-LAMP |
Reverse transcription loop-mediated isothermal amplification |
RT-RPA |
Reverse transcription recombinase polymerase amplification |
NGS |
Next-generation sequencing |
NMI |
National Metrology Institutes |
RM |
Reference materials |
SARS-CoV-2 |
Severe acute respiratory syndrome coronavirus-2 |
GISAID |
Global Initiative on Sharing All Influenza Data |
PANGO lineage |
Phylogenetic Assignment of Named Global Outbreak LINeages |
CDC |
US Centers for Disease Control and Prevention |
PHE |
Public Health England |
VUI |
Variant Under Investigation |
VOC |
Variants Of Concern |
BAL |
Bronchoalveolar lavage |
ET |
Endotracheal aspirate |
FBB |
Fibrobronchoscope brush biopsy |
Cq |
Quantification cycle |
Ct |
Threshold cycle |
LoD |
Limit of detection |
LoQ |
Limit of quantification |
FNR |
False-negative rates |
FPR |
False-positive rates |
NSLB |
Nucleic acid stabilization and lysis buffer |
VTM |
Viral transport medium |
RdRp |
RNA-dependent RNA polymerase |
E |
Envelope |
N |
Nucleocapsid |
cDNA |
Complementary DNA |
LAMP |
Loop-mediated isothermal amplification |
RPA |
Recombinase polymerase amplification |
NASBA |
Nucleic acid sequence-based amplification |
SDA |
Strand-displacement amplification |
RCA |
Rolling circle amplification |
FIP |
Forward inner primer |
BIP |
Backward inner primer |
CRISPR |
Clustered Regularly Interspaced Short Palindromic Repeats |
WHO |
World Health Organization |
SPIA |
Single primer isothermal amplification |
DETECTR |
DNA Endonuclease-Targeted CRISPR Trans Reporter |
SHERLOCK |
Specific High Sensitivity Enzymatic Reporter UnLOCKing |
RT |
Reverse transcription |
CCQM |
Consultative Committee on the Quantity of Material |
CRMs |
Certified reference materials |
CIPM |
Comité international des poids et mesures |
BIPM |
Bureau international des poids et mesures |
NMI |
National Metrology Institutes |
NIBSC |
National Institute for Biological Standards and Control |
NAT |
Nucleic acid amplification technique |
ATCC |
American Type Culture Collection |
NIMC |
National Institute of Metrology of China |
JRC |
Joint Research Centre in Europe |
KRISS |
Korea Research Institute of Standards and Science |
NMIA |
National Measurement Institute of Australia |
NIST |
National Institute of Standards and Technology |
UME |
The National Metrology Institute of Turkey |
ViPR |
Virus Pathogen Resources |
NIAID |
National Institute of Allergy and Infectious Diseases |
NCCP |
National Culture Collection for Pathogens of Korea |
EVAg |
European Virus-Archive Global |