Table 1. Dissociation Constants (KD, nM) Measured for Pre-miR-21 Binding Alone or in the Presence of 100 equiv Excess of tRNA (KD′, nM) or 100 equiv Excess of DNA Duplex (KD″, nM).
entry | ID | KD [nM]a pre-miR-21 | KD′ [nM] (tRNA competition) | KD′/KD | KD″ [nM] (DNA competition) | KD″/KD |
---|---|---|---|---|---|---|
1 | neomycin | 1390 ± 126 | 1415 ± 110 | 1.0 | 1950 ± 20.2 | 1.4 |
2 | 1 | 128 ± 12 | 134 ± 14 | 1.0 | 171 ± 16 | 1.3 |
3 | 6a | 133 ± 20 | 151 ± 13 | 1.1 | 187 ± 24 | 1.4 |
4 | 6a′ | 128 ± 7.0 | 170 ± 48 | 1.3 | 261 ± 60 | 2.0 |
5 | 6b | 50.7 ± 7.4 | 51.0 ± 8.7 | 1.0 | 95.7 ± 22 | 1.9 |
6 | 6b′ | 348 ± 34 | 405 ± 138 | 1.2 | 877 ± 79 | 2.5 |
7 | 6c | 50.3 ± 11 | 50.4 ± 7.0 | 1.0 | 80.9 ± 3.2 | 1.6 |
8 | 6c′ | 162 ± 40 | 168 ± 10 | 1.0 | 274 ± 30 | 1.7 |
9 | 15 | 641 ± 165 | 807 ± 270 | 1.3 | 1459 ± 70 | 2.3 |
Binding studies were performed on 5′-FAM-pre-miR-21 in buffer A (20 mm Tris–HCl (pH 7.4), 12 mm NaCl, 2.5 mm MgCl2, and 1 mm DTT).