Table 3.
Plasmodium vivax loci identified by DeepSweep (DS; with > 6 SNPs)
| Chr | Gene ID (PVP01_) |
DS Hits |
iHS hits |
Rsb hits |
|---|---|---|---|---|
| 14 | 1430700 | 21 | ||
| 5 | 526800** | 19 | 4 | 12 |
| 11 | 1101300 | 14 | 2 | |
| 14 | 1428700** | 13 | 1 | 5 |
| 2 | 202000 | 11 | 4 | |
| 7 | 709800 | 11 | 0 | |
| 10 | 1011000** | 11 | 1 | |
| 14 | 1432900 | 11 | 1 | 1 |
| 5 | 526400** | 10 | 1 | 12 |
| 7 | 701100 | 10 | 8 | |
| 9 | 948800 | 10 | 5 | |
| 5 | 526300** | 9 | 2 | 4 |
| 10 | 1034400 | 9 | ||
| 12 | 1271500 | 8 | ||
| 2 | 203000* | 7 | 33 | |
| 9 | 939900 | 7 | 2 | 1 |
| 10 | 1033900 | 7 | ||
| 13 | 1317300 | 7 | 15 | |
| 14 | 1418100 | 7 | 1 |
Chr Chromosome, iHS and Rsb Counts defined as the number of SNPs in a gene that have an iHS or Rsb score with a p-value < 0.0001; pvdhfr (Chr. 5), pvmdr1 (Chr. 10), pvdhps (Chr. 14); * previously identified; ** close to known gene