Table 1.
Attributes of samples collected in this study.
| Sample identifier | Tissue | Animal Condition | Description |
|---|---|---|---|
| C_GILL_F1 | Gill | Naïve | Gill biological replicate 1 |
| C_GILL_F2 | Gill biological replicate 2 | ||
| C_GILL_F3 | Gill biological replicate 3 | ||
| C_GILL_F4 | Gill biological replicate 4 | ||
| INF_D_GILL_F5 | AGD-affected | Gill biopsy distal to the lesion biological replicate 1 | |
| INF_D_GILL_F6 | Gill biopsy distal to the lesion biological replicate 2 | ||
| INF_D_GILL_F7 | Gill biopsy distal to the lesion biological replicate 3 | ||
| INF_D_GILL_F8 | Gill biopsy distal to the lesion biological replicate 4 | ||
| INF_LES_F5 | Gill & Neoparamoeba perurans | Gill biopsy at the lesion biological replicate 1 | |
| INF_LES_F6 | Gill biopsy at the lesion biological replicate 2 | ||
| INF_LES_F7* | Gill biopsy at the lesion biological replicate 3 | ||
| INF_LES_F8 | Gill biopsy at the lesion biological replicate 4 | ||
| C_HK_F1 | Head kidney | Naïve | Head kidney biological replicate 1 |
| C_HK_F2 | Head kidney biological replicate 2 | ||
| C_HK_F3 | Head kidney biological replicate 3 | ||
| C_HK_F4 | Head kidney biological replicate 4 | ||
| INF_HK_F5 | AGD-affected | Head kidney biological replicate 1 | |
| INF_HK_F6 | Head kidney biological replicate 2 | ||
| INF_HK_F7 | Head kidney biological replicate 3 | ||
| INF_HK_F8 | Head kidney biological replicate 4 | ||
| C_SP_F1 | Spleen | Naïve | Spleen biological replicate 1 |
| C_SP_F2 | Spleen biological replicate 2 | ||
| C_SP_F3 | Spleen biological replicate 3 | ||
| C_SP_F4 | Spleen biological replicate 4 | ||
| INF_SP_F5 | AGD-affected | Spleen biological replicate 1 | |
| INF_SP_F6 | Spleen biological replicate 2 | ||
| INF_SP_F7 | Spleen biological replicate 3 | ||
| INF_SP_F8 | Spleen biological replicate 4 | ||
| FL_CELLS_1 | Neoparamoeba perurans | Floating trophozoite | Cultured N. perurans floating trophozoites biological replicate 1 |
| FL_CELLS_2 | Cultured N. perurans floating trophozoites biological replicate 2 | ||
| FL_CELLS_3 | Cultured N. perurans floating trophozoites biological replicate 3 |
*Sample INF_LES_F7 failed RNA quality control and was excluded from the study.
C, control animal not affected by AGD; F#, fish number; INF, AGD-affected; D, biopsy distal to the lesion; LES, lesion biopsy; HK, head kidney; SP, spleen.