Table 1.
An overview of meta information of four PDAC datasets.
| Study | ERP022034 | SRP096338 | SRP197641 | TCGA-PAAD |
|---|---|---|---|---|
| DataSubmittedLab | AROS Applied Biotechnology A/S (Aarhus, Denmark). | Klinikum rechts der Isar | The University of North Carolina at Chapel Hill | University of North Carolina |
| Sequencing Platform | ||||
| HiSeq | 30 | 214 | 66 | 147 |
| NextSeq | / | / | 125 | / |
| Library Layout | ||||
| single | / | 214 | 66 | / |
| paired | 30 | / | 125 | 147 |
| Experiment Strategy | ||||
| NuGENExome | / | 199 | / | / |
| TruSeqExome | / | 15 | 55 | / |
| TruSeqmRNA | 30 | / | 136 | / |
| Sample Type | ||||
| FF | / | / | 70 | / |
| FC | 30 | 214 | / | / |
| FFPE | / | / | 7 | 147 |
| Biopsies | / | / | 114 | / |
| Tissue Source | ||||
| Human Tissue | / | 214 | 163 | 147 |
| PDX | 30 | / | 28 | / |
| Sampling Site | ||||
| stroma | / | 128 | / | / |
| epithelium | / | 71 | / | / |
| bulk | 30 | 15 | 191 | 147 |
| Sex | ||||
| male | 16 | / | / | 79 |
| female | 14 | / | / | 68 |
| Age | ||||
| <=65 | / | / | / | 75 |
| >65 | / | / | / | 72 |
“/” means NA, which indicates that the dataset does not possess the characteristic.