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. 2021 Jun 2;37:107191. doi: 10.1016/j.dib.2021.107191
Subject Medical Imaging, Clinical Genetics
Specific subject area Structural MRI scans, WHO 2016 subtypes, tumor segmentations of patients with glioma
Type of data MRI data (NIfTI files):
 Pre-contrast T1-weighted
 Post-contrast T1-weighted
 T2-weighted
 T2-weighted FLAIR
Genetic and histological data (Excel files):
 IDH mutation status
 1p/19q co-deletion status
 Grade
Tumor segmentations (NIfTI files)
How data were acquired MRI Scans were acquired on a variety of scanners and field strengths from four different vendors.
Genetic and histological data were obtained by analysis of tumor tissue obtained from biopsy or resection.
Whole tumor segmentations were manually annotated by one of four different observers or automatically generated using a convolutional neural network [1].
Data format Raw
Parameters for data collection MRI images were acquired using a range of different settings.
Description of data collection Patients with glioma treated at the Erasmus MC between 2008 and 2018 were retrospectively included. Pre-operative imaging was acquired according to routine clinical protocols. IDH mutation status, 1p/19q co-deletion status, and grade were determined either as part of the treatment process or for research purposes.
Data source location Erasmus MC (University Medical Center Rotterdam)
Rotterdam
The Netherlands
Data accessibility Repository name: Health-RI XNAT
Data identification number: EGD
Direct URL to data: https://xnat.bmia.nl/data/archive/projects/egd
The data usage agreement is available as a supplementary file.
The data downloader is available at https://doi.org/10.5281/zenodo.4761088.