Subject |
Medical Imaging, Clinical Genetics |
Specific subject area |
Structural MRI scans, WHO 2016 subtypes, tumor segmentations of patients with glioma |
Type of data |
MRI data (NIfTI files): |
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Pre-contrast T1-weighted |
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Post-contrast T1-weighted |
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T2-weighted |
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T2-weighted FLAIR |
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Genetic and histological data (Excel files): |
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IDH mutation status |
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1p/19q co-deletion status |
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Grade |
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Tumor segmentations (NIfTI files) |
How data were acquired |
MRI Scans were acquired on a variety of scanners and field strengths from four different vendors. |
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Genetic and histological data were obtained by analysis of tumor tissue obtained from biopsy or resection. |
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Whole tumor segmentations were manually annotated by one of four different observers or automatically generated using a convolutional neural network [1]. |
Data format |
Raw |
Parameters for data collection |
MRI images were acquired using a range of different settings. |
Description of data collection |
Patients with glioma treated at the Erasmus MC between 2008 and 2018 were retrospectively included. Pre-operative imaging was acquired according to routine clinical protocols. IDH mutation status, 1p/19q co-deletion status, and grade were determined either as part of the treatment process or for research purposes. |
Data source location |
Erasmus MC (University Medical Center Rotterdam) |
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Rotterdam |
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The Netherlands |
Data accessibility |
Repository name: Health-RI XNAT |
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Data identification number: EGD |
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Direct URL to data: https://xnat.bmia.nl/data/archive/projects/egd
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The data usage agreement is available as a supplementary file. |
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The data downloader is available at https://doi.org/10.5281/zenodo.4761088. |