Table 1.
Details of cultured isolates and assembled genomes. For more details on isolate sequencing, see Additional file 6: Table S4
| Sample | Isolate number | Species | Genome size (bp) | Number of contigs (number circularized) |
|---|---|---|---|---|
| Effluent | 1 | Citrobacter portucalensis | 5,213,846 | 4 (4) |
| 2 | Enterobacter cloacae | 5,590,302 | 9 (7) | |
| 3 | Enterobacter cloacae | 5,465,276 | 7 (5) | |
| 4 | Enterobacter cloacae | 5,393,186 | 8 (4) | |
| Pig caeca | 1 | Escherichia coli | 4,898,477 | 5 (5) |
| 2 | Escherichia coli | 4,967,077 | 2 (2) | |
| Upstream sediment | 1 | Citrobacter freundii | 4,839,493 | 1 (1) |