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Comparisons of reliability measures among tree inference methods on a) gapped and b) ungapped MSAs. The violin plots represent distribution of reliability measures (BS = bootstrap, PP = Bayesian posterior probability, CPP = CNN topology posterior probability) for correctly and incorrectly inferred topologies. MP = maximum parsimony; NJ = neighbor-joining; ML = maximum likelihood; BI = Bayesian inference; CNN = convolutional neuronal network.
